José María Fernández
José María Fernández
Senior Research Engineer, Barcelona Supercomputing Center
Verified email at - Homepage
Cited by
Cited by
Reductive genome evolution in Buchnera aphidicola
RCHJ Van Ham, J Kamerbeek, C Palacios, C Rausell, F Abascal, ...
Proceedings of the National Academy of Sciences 100 (2), 581-586, 2003
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
iHOP web services
JM Fernandez, R Hoffmann, A Valencia
Nucleic acids research 35 (suppl_2), W21-W26, 2007
Interoperability with Moby 1.0-it's better than sharing your toothbrush!
M Wilkinson
Nature Precedings, 1-1, 2008
The BLUEPRINT data analysis portal
JM Fernández, V de la Torre, D Richardson, R Royo, M Puiggròs, ...
Cell systems 3 (5), 491-495. e5, 2016
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
Current concepts on microscopic colitis: evidence‐based statements and recommendations of the Spanish Microscopic Colitis Group
F Fernández‐Bañares, MJ Casanova, Y Arguedas, B Beltrán, D Busquets, ...
Alimentary Pharmacology & Therapeutics 43 (3), 400-426, 2016
Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction
J Tamames, D Clark, J Herrero, J Dopazo, C Blaschke, JM Fernández, ...
Journal of Biotechnology 98 (2-3), 269-283, 2002
Identification and validation of clinical phenotypes with prognostic implications in patients admitted to hospital with COVID-19: a multicentre cohort study
B Gutiérrez-Gutiérrez, MD Del Toro, AM Borobia, A Carcas, I Jarrín, ...
The Lancet infectious diseases 21 (6), 783-792, 2021
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1, 1-19, 2010
Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation
JK Hériché, JG Lees, I Morilla, T Walter, B Petrova, MJ Roberti, ...
Molecular biology of the cell 25 (16), 2522-2536, 2014
RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses
M Rubio-Camarillo, G Gómez-López, JM Fernández, A Valencia, ...
Bioinformatics 29 (13), 1687-1689, 2013
The EMBRACE web service collection
S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
Packaging research artefacts with RO-Crate
S Soiland-Reyes, P Sefton, M Crosas, LJ Castro, F Coppens, ...
Data Science 5 (2), 97-138, 2022
Challenge-based learning in aerospace engineering education: The ESA concurrent engineering challenge at the Technical University of Madrid
D López-Fernández, PS Sánchez, J Fernández, I Tinao, V Lapuerta
Acta Astronautica 171, 369-377, 2020
The CFVib experiment: control of fluids in microgravity with vibrations
J Fernandez, PS Sánchez, I Tinao, J Porter, JM Ezquerro
Microgravity Science and Technology 29, 351-364, 2017
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ...
Nucleic acids research 48 (W1), W538-W545, 2020
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
T Katayama, MD Wilkinson, R Vos, T Kawashima, S Kawashima, ...
Journal of biomedical semantics 2, 1-18, 2011
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