Follow
Nicholas Bergman
Nicholas Bergman
Director, National Biodefense Analysis and Countermeasures Center
Verified email at st.dhs.gov
Title
Cited by
Cited by
Year
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy
Genome research 27 (5), 722-736, 2017
58252017
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome biology 17, 1-14, 2016
23572016
Interactive metagenomic visualization in a Web browser
BD Ondov, NH Bergman, AM Phillippy
BMC bioinformatics 12, 1-10, 2011
18782011
Reducing assembly complexity of microbial genomes with single-molecule sequencing
S Koren, GP Harhay, TPL Smith, JL Bono, DM Harhay, SD Mcvey, ...
Genome biology 14, 1-16, 2013
4452013
Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2
J Arizti-Sanz, CA Freije, AC Stanton, BA Petros, CK Boehm, S Siddiqui, ...
Nature communications 11 (1), 5921, 2020
3042020
Structure and complexity of a bacterial transcriptome
KD Passalacqua, A Varadarajan, BD Ondov, DT Okou, ME Zwick, ...
Journal of bacteriology 191 (10), 3203-3211, 2009
2762009
Formation and Composition of the Bacillus anthracis Endospore
H Liu, NH Bergman, B Thomason, S Shallom, A Hazen, J Crossno, ...
Journal of bacteriology 186 (1), 164-178, 2004
2742004
The structural basis for terminator recognition by the Rho transcription termination factor
CE Bogden, D Fass, N Bergman, MD Nichols, JM Berger
Molecular cell 3 (4), 487-493, 1999
1571999
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
BD Ondov, A Varadarajan, KD Passalacqua, NH Bergman
Bioinformatics 24 (23), 2776-2777, 2008
1532008
Biosynthetic Analysis of the Petrobactin Siderophore Pathway from Bacillusanthracis
JY Lee, BK Janes, KD Passalacqua, BF Pfleger, NH Bergman, H Liu, ...
Journal of bacteriology 189 (5), 1698-1710, 2007
1322007
Transcriptional Profiling of the Bacillus anthracis Life Cycle In Vitro and an Implied Model for Regulation of Spore Formation
NH Bergman, EC Anderson, EE Swenson, MM Niemeyer, AD Miyoshi, ...
Journal of bacteriology 188 (17), 6092-6100, 2006
1272006
Transcriptional Profiling of the Bacillus anthracis Life Cycle In Vitro and an Implied Model for Regulation of Spore Formation
NH Bergman, EC Anderson, EE Swenson, MM Niemeyer, AD Miyoshi, ...
Journal of bacteriology 188 (17), 6092-6100, 2006
1272006
Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe
EP Price, ML Seymour, DS Sarovich, J Latham, SR Wolken, J Mason, ...
Emerging infectious diseases 18 (8), 1307, 2012
1152012
Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes
AB Hall, PA Papathanos, A Sharma, C Cheng, OS Akbari, L Assour, ...
Proceedings of the National Academy of Sciences 113 (15), E2114-E2123, 2016
1042016
Genomic fluidity: an integrative view of gene diversity within microbial populations
AO Kislyuk, B Haegeman, NH Bergman, JS Weitz
BMC genomics 12, 1-10, 2011
1002011
Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923
TJ Treangen, RA Maybank, S Enke, MB Friss, LF Diviak, DKR Karaolis, ...
Genome announcements 2 (6), 10.1128/genomea. 01110-14, 2014
832014
Transcriptional Profiling of Bacillus anthracis during Infection of Host Macrophages
NH Bergman, EC Anderson, EE Swenson, BK Janes, N Fisher, ...
Infection and immunity 75 (7), 3434-3444, 2007
832007
Structural and functional analysis of AsbF: origin of the stealth 3, 4-dihydroxybenzoic acid subunit for petrobactin biosynthesis
BF Pfleger, Y Kim, TD Nusca, N Maltseva, JY Lee, CM Rath, JB Scaglione, ...
Proceedings of the National Academy of Sciences 105 (44), 17133-17138, 2008
742008
Kinetic framework for ligation by an efficient RNA ligase ribozyme
NH Bergman, WK Johnston, DP Bartel
Biochemistry 39 (11), 3115-3123, 2000
712000
Adeno-associated virus type 2 in US children with acute severe hepatitis
V Servellita, A Sotomayor Gonzalez, DM Lamson, A Foresythe, HJ Huh, ...
Nature 617 (7961), 574-580, 2023
682023
The system can't perform the operation now. Try again later.
Articles 1–20