| miR-199a links MeCP2 with mTOR signaling and its dysregulation leads to Rett syndrome phenotypes K Tsujimura, K Irie, H Nakashima, Y Egashira, Y Fukao, M Fujiwara, ... Cell reports 12 (11), 1887-1901, 2015 | 110 | 2015 |
| Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals M Uesaka, O Nishimura, Y Go, K Nakashima, K Agata, T Imamura BMC genomics 15 (1), 35, 2014 | 110 | 2014 |
| Gene activation-associated long noncoding RNAs function in mouse preimplantation development N Hamazaki, M Uesaka, K Nakashima, K Agata, T Imamura Development 142 (5), 910-920, 2015 | 107 | 2015 |
| Constrained vertebrate evolution by pleiotropic genes H Hu, M Uesaka, S Guo, K Shimai, TM Lu, F Li, S Fujimoto, M Ishikawa, ... Nature Ecology & Evolution, 1, 2017 | 81 | 2017 |
| Single-stranded noncoding RNAs mediate local epigenetic alterations at gene promoters in rat cell lines J Tomikawa, H Shimokawa, M Uesaka, N Yamamoto, Y Mori, ... Journal of Biological Chemistry 286 (40), 34788-34799, 2011 | 40 | 2011 |
| Epigenetic setting and reprogramming for neural cell fate determination and differentiation T Imamura, M Uesaka, K Nakashima Philosophical Transactions of the Royal Society B: Biological Sciences 369 …, 2014 | 36 | 2014 |
| Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Y Li, A Omori, RL Flores, S Satterfield, C Nguyen, T Ota, T Tsurugaya, ... Communications Biology 3 (1), 1-10, 2020 | 32 | 2020 |
| Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos Y Uchida, M Uesaka, T Yamamoto, H Takeda, N Irie EvoDevo 9 (1), 7, 2018 | 28 | 2018 |
| MeCP2 controls neural stem cell fate specification through miR-199a-mediated inhibition of BMP-Smad signaling H Nakashima, K Tsujimura, K Irie, T Imamura, CA Trujillo, M Ishizu, ... Cell Reports 35 (7), 109124, 2021 | 26 | 2021 |
| Recapitulation-like developmental transitions of chromatin accessibility in vertebrates M Uesaka, S Kuratani, H Takeda, N Irie Zoological Letters 5 (1), 1-15, 2019 | 26 | 2019 |
| Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals M Uesaka, K Agata, T Oishi, K Nakashima, T Imamura BMC genomics 18 (1), 285, 2017 | 22 | 2017 |
| The developmental hourglass model and recapitulation: An attempt to integrate the two models M Uesaka, S Kuratani, N Irie Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2021 | 15 | 2021 |
| Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ... bioRxiv, 2023.04. 08.536076, 2023 | 10 | 2023 |
| How can recapitulation be reconciled with modern concepts of evolution? S Kuratani, M Uesaka, N Irie Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2020 | 10 | 2020 |
| Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ... Nature Ecology & Evolution, 1-17, 2024 | 4 | 2024 |
| Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms JCK Leong, Y Li, M Uesaka, Y Uchida, A Omori, M Hao, W Wan, Y Dong, ... Frontiers in cell and developmental biology 9, 749963, 2021 | 3 | 2021 |
| Beyond recapitulation: Past, present, and future M Uesaka, N Irie Journal of Experimental Zoology Part B: Molecular and Developmental …, 2022 | 2 | 2022 |
| Distinguishing Evolutionary Conservation from Derivedness JCK Leong, M Uesaka, N Irie Life 12 (3), 440, 2022 | 1 | 2022 |
| Roles of Epigenetics in the Neural Stem Cell and Neuron N Yamamoto, M Uesaka, T Imamura, K Nakashima Epigenetics in Psychiatry, 51-78, 2014 | 1* | 2014 |
| Cell-to Species-Level Diversity of Epigenetic Setting for Androgen Receptor Expression in Mammals M Uesaka, T Imamura J Steroids Hormon Sci S 2, 2, 2011 | 1 | 2011 |
