| An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization DM Hinckley, GS Freeman, JK Whitmer, JJ De Pablo The Journal of chemical physics 139 (14), 2013 | 250 | 2013 |
| Coarse-grained modeling of DNA curvature GS Freeman, DM Hinckley, JP Lequieu, JK Whitmer, JJ De Pablo The Journal of chemical physics 141 (16), 2014 | 109 | 2014 |
| DNA shape dominates sequence affinity in nucleosome formation GS Freeman, JP Lequieu, DM Hinckley, JK Whitmer, JJ De Pablo Physical Review Letters 113 (16), 168101, 2014 | 87 | 2014 |
| Coarse-grained modeling of DNA oligomer hybridization: length, sequence, and salt effects DM Hinckley, JP Lequieu, JJ de Pablo The Journal of chemical physics 141 (3), 2014 | 87 | 2014 |
| A coarse-grain three-site-per-nucleotide model for DNA with explicit ions GS Freeman, DM Hinckley, JJ de Pablo The Journal of chemical physics 135 (16), 2011 | 68 | 2011 |
| Holliday junction thermodynamics and structure: Coarse-grained simulations and experiments W Wang, LM Nocka, BZ Wiemann, DM Hinckley, I Mukerji, FW Starr Scientific reports 6 (1), 22863, 2016 | 28 | 2016 |
| Coarse-grained ions for nucleic acid modeling DM Hinckley, JJ de Pablo Journal of chemical theory and computation 11 (11), 5436-5446, 2015 | 26 | 2015 |
| A molecular view of the dynamics of dsDNA packing inside viral capsids in the presence of ions A Córdoba, DM Hinckley, J Lequieu, JJ de Pablo Biophysical journal 112 (7), 1302-1315, 2017 | 22 | 2017 |
| Mechanical response of dna–nanoparticle crystals to controlled deformation J Lequieu, A Córdoba, D Hinckley, JJ de Pablo ACS central science 2 (9), 614-620, 2016 | 19 | 2016 |
| A molecular view of DNA-conjugated nanoparticle association energies JP Lequieu, DM Hinckley, JJ de Pablo Soft Matter 11 (10), 1919-1929, 2015 | 12 | 2015 |
| Large eddy simulation of industrial flares P Smith, J Thornock, D Hinckley, M Hradisky Proceedings of the 2011 companion on High Performance Computing Networking …, 2011 | 6 | 2011 |
| Coarse-grained DNA modeling: Hybridization and ionic effects DM Hinckley The University of Wisconsin-Madison, 2014 | | 2014 |
| Mechanical response of DNA–nanoparticle crystals to controlled deformation (Suppl. Information) JP Lequieu, A Córdoba, D Hinckley | | |
| Supporting Information for “Coarse-grained Ions for Nucleic Acid Modeling” DM Hinckley, JJ de Pablo | | |
Juan J. de PabloProfessor of Molecular Engineering, University of ChicagoVerified email at uchicago.edu
