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Nicholas Ceglia
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Reprogramming of the circadian clock by nutritional challenge
KL Eckel-Mahan, VR Patel, S De Mateo, R Orozco-Solis, NJ Ceglia, ...
Cell 155 (7), 1464-1478, 2013
5152013
Partitioning circadian transcription by SIRT6 leads to segregated control of cellular metabolism
S Masri, P Rigor, M Cervantes, N Ceglia, C Sebastian, C Xiao, ...
Cell 158 (3), 659-672, 2014
2322014
Atlas of circadian metabolism reveals system-wide coordination and communication between clocks
KA Dyar, D Lutter, A Artati, NJ Ceglia, Y Liu, D Armenta, M Jastroch, ...
Cell 174 (6), 1571-1585. e11, 2018
1802018
Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
AW Zhang, C O’Flanagan, EA Chavez, JLP Lim, N Ceglia, A McPherson, ...
Nature methods 16 (10), 1007-1015, 2019
1512019
Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
CH O’Flanagan, KR Campbell, AW Zhang, F Kabeer, JLP Lim, J Biele, ...
Genome biology 20 (1), 1-13, 2019
972019
Fasting imparts a switch to alternative daily pathways in liver and muscle
K Kinouchi, C Magnan, N Ceglia, Y Liu, M Cervantes, N Pastore, T Huynh, ...
Cell reports 25 (12), 3299-3314. e6, 2018
782018
Circadian control of fatty acid elongation by SIRT1 protein-mediated deacetylation of acetyl-coenzyme A synthetase 1
S Sahar, S Masubuchi, K Eckel-Mahan, S Vollmer, L Galla, N Ceglia, ...
Journal of Biological Chemistry 289 (9), 6091-6097, 2014
682014
What time is it? Deep learning approaches for circadian rhythms
F Agostinelli, N Ceglia, B Shahbaba, P Sassone-Corsi, P Baldi
Bioinformatics 32 (12), i8-i17, 2016
622016
Comparative circadian metabolomics reveal differential effects of nutritional challenge in the serum and liver
S Abbondante, KL Eckel-Mahan, NJ Ceglia, P Baldi, P Sassone-Corsi
Journal of Biological Chemistry 291 (6), 2812-2828, 2016
522016
SIRT6 suppresses cancer stem-like capacity in tumors with PI3K activation independently of its deacetylase activity
RM Ioris, M Galie, G Ramadori, JG Anderson, A Charollais, ...
Cell reports 18 (8), 1858-1868, 2017
452017
The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework
VR Patel, N Ceglia, M Zeller, K Eckel-Mahan, P Sassone-Corsi, P Baldi
Bioinformatics 31 (19), 3181-3188, 2015
322015
CircadiOmics: circadian omic web portal
N Ceglia, Y Liu, S Chen, F Agostinelli, K Eckel-Mahan, P Sassone-Corsi, ...
Nucleic acids research 46 (W1), W157-W162, 2018
282018
Mir-132/212 is required for maturation of binocular matching of orientation preference and depth perception
R Mazziotti, L Baroncelli, N Ceglia, G Chelini, GD Sala, C Magnan, ...
Nature communications 8 (1), 1-12, 2017
272017
Clonal fitness inferred from time-series modelling of single-cell cancer genomes
S Salehi, F Kabeer, N Ceglia, M Andronescu, MJ Williams, KR Campbell, ...
Nature 595 (7868), 585-590, 2021
252021
The circadian dynamics of the hippocampal transcriptome and proteome is altered in experimental temporal lobe epilepsy
KJ Debski, N Ceglia, A Ghestem, AI Ivanov, GE Brancati, S Bröer, AM Bot, ...
Science advances 6 (41), eaat5979, 2020
242020
Distinct metabolic adaptation of liver circadian pathways to acute and chronic patterns of alcohol intake
J Gaucher, K Kinouchi, N Ceglia, E Montellier, S Peleg, CM Greco, ...
Proceedings of the National Academy of Sciences 116 (50), 25250-25259, 2019
192019
S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling
CM Greco, M Cervantes, JM Fustin, K Ito, N Ceglia, M Samad, J Shi, ...
Science advances 6 (51), eabc5629, 2020
182020
Tim-4+ cavity-resident macrophages impair anti-tumor CD8+ T cell immunity
A Chow, S Schad, MD Green, MD Hellmann, V Allaj, N Ceglia, G Zago, ...
Cancer cell 39 (7), 973-988. e9, 2021
162021
Genome architecture mediates transcriptional control of human myogenic reprogramming
S Liu, H Chen, S Ronquist, L Seaman, N Ceglia, W Meixner, PY Chen, ...
Iscience 6, 232-246, 2018
122018
Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer
S Salehi, F Kabeer, N Ceglia, M Andronescu, M Williams, KR Campbell, ...
bioRxiv, 2020
52020
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Articles 1–20