Olga Kalinina
Olga Kalinina
Helmholtz Institute for Pharmaceutical Research Saarland
Verified email at helmholtz-hzi.de - Homepage
Title
Cited by
Cited by
Year
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ...
science 326 (5957), 1263-1268, 2009
3112009
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
OV Kalinina, AA Mironov, MS Gelfand, AB Rakhmaninova
Protein Science 13 (2), 443-456, 2004
1452004
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
OV Kalinina, PS Novichkov, AA Mironov, MS Gelfand, AB Rakhmaninova
Nucleic acids research 32 (suppl 2), W424-W428, 2004
1002004
Comparative genomics of regulation of heavy metal resistance in Eubacteria
EA Permina, AE Kazakov, OV Kalinina, MS Gelfand
BMC microbiology 6 (1), 1-11, 2006
912006
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies
PV Mazin, MS Gelfand, AA Mironov, AB Rakhmaninova, AR Rubinov, ...
Algorithms for Molecular Biology 5 (1), 1-12, 2010
642010
Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases
A Zeke, T Bastys, A Alexa, Á Garai, B Mészáros, K Kirsch, Z Dosztányi, ...
Molecular systems biology 11 (11), 837, 2015
472015
Combining specificity determining and conserved residues improves functional site prediction
OV Kalinina, MS Gelfand, RB Russell
BMC bioinformatics 10 (1), 1-24, 2009
462009
Combinations of protein-chemical complex structures reveal new targets for established drugs
OV Kalinina, O Wichmann, G Apic, RB Russell
PLOS computational biology 7 (5), e1002043, 2011
322011
Enthalpy–Entropy Compensation upon Molecular Conformational Changes
M Ahmad, V Helms, T Lengauer, OV Kalinina
Journal of Chemical Theory and Computation 11 (4), 1410-1418, 2015
282015
StructMAn: annotation of single-nucleotide polymorphisms in the structural context
A Gress, V Ramensky, J Büch, A Keller, OV Kalinina
Nucleic acids research 44 (W1), W463-W468, 2016
252016
Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
OV Kalinina, N Pfeifer, T Lengauer
Retrovirology 10 (1), 130, 2013
252013
Detection of atypical genes in virus families using a one-class SVM
S Metzler, OV Kalinina
BMC genomics 15 (1), 1-12, 2014
192014
Targeting actin inhibits repair of doxorubicin-induced DNA damage: a novel therapeutic approach for combination therapy
L Pfitzer, C Moser, F Gegenfurtner, A Arner, F Foerster, C Atzberger, ...
Cell death & disease 10 (4), 1-14, 2019
162019
Spatial distribution of disease-associated variants in three-dimensional structures of protein complexes
A Gress, V Ramensky, OV Kalinina
Oncogenesis 6 (9), e380-e380, 2017
162017
ProtChemSI: a network of protein–chemical structural interactions
OV Kalinina, O Wichmann, G Apic, RB Russell
Nucleic acids research 40 (D1), D549-D553, 2012
162012
Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications
NJ Oparina, OV Kalinina, MS Gelfand, LL Kisselev
Nucleic acids research 33 (16), 5226-5234, 2005
162005
BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms
SC Mueller, C Backes, OV Kalinina, B Meder, D Stöckel, HP Lenhof, ...
Genome medicine 7 (1), 1-8, 2015
112015
The Role of Conformational Changes in Molecular Recognition
M Ahmad, V Helms, OV Kalinina, T Lengauer
The Journal of Physical Chemistry B 120 (9), 2138-2144, 2016
102016
Consistent prediction of mutation effect on drug binding in HIV-1 protease using alchemical calculations
T Bastys, V Gapsys, NT Doncheva, R Kaiser, BL de Groot, OV Kalinina
Journal of chemical theory and computation 14 (7), 3397-3408, 2018
92018
Computational identification of novel amino-acid interactions in HIV Gag via correlated evolution
OV Kalinina, H Oberwinkler, B Glass, HG Kräusslich, RB Russell, ...
PloS one 7 (8), e42468, 1-e42468, 5, 2012
92012
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Articles 1–20