| SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (3), 396-411, 2018 | 277 | 2018 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 217 | 2016 |
| GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text Q Zhu, X Li, A Conesa, C Pereira Bioinformatics 34 (9), 1547-1554, 2018 | 148 | 2018 |
| Advances and applications in the quest for orthologs N Glover, C Dessimoz, I Ebersberger, SK Forslund, T Gabaldón, ... Molecular biology and evolution 36 (10), 2157-2164, 2019 | 78 | 2019 |
| Comparative metagenomics provides insight into the ecosystem functioning of the Shark Bay Stromatolites, Western Australia J Babilonia, A Conesa, G Casaburi, C Pereira, AS Louyakis, RP Reid, ... Frontiers in microbiology 9, 1359, 2018 | 39 | 2018 |
| Gearing up to handle the mosaic nature of life in the quest for orthologs K Forslund, C Pereira, S Capella-Gutierrez, AS da Silva, A Altenhoff, ... Bioinformatics 34 (2), 323-329, 2018 | 32 | 2018 |
| STRASS: A Light and Effective Method for Extractive Summarization Based on Sentence Embeddings L Bouscarrat, A Bonnefoy, T Peel, C Pereira ACL student workshop, 2019 | 23 | 2019 |
| A meta-approach for improving the prediction and the functional annotation of ortholog groups C Pereira, A Denise, O Lespinet BMC genomics 15 (6), 1-8, 2014 | 23 | 2014 |
| Assessment of unconventional antimicrobial compounds for the control of ‘Candidatus Liberibacter asiaticus’, the causative agent of citrus greening disease CL Gardner, DR da Silva, FA Pagliai, L Pan, KA Padgett-Pagliai, ... Scientific reports 10 (1), 5395, 2020 | 18 | 2020 |
| Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ... Genome research 28 (7), 1096, 2018 | 12 | 2018 |
| Quest for Orthologs consortium, Toni Gabaldón, Suzanna E Lewis, Paul D Thomas, Erik Sonnhammer, and Christophe Dessimoz. Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature Methods 13, 425-430, 2016 | 8 | 2016 |
| Francisco Jose Pardo-Palacios, Hector Del Risco, Marc Ferrell, et al. 2018.“SQANTI: Extensive Characterization of Long-Read Transcript Sequences for Quality Control in Full … M Tardaguila, L de la Fuente, C Marti, C Pereira Genome Research, 0 | 7 | |
| Padhoc: a computational pipeline for pathway reconstruction on the fly S Casani-Galdon, C Pereira, A Conesa Bioinformatics 36 (Supplement_2), i795–i803, 2020 | 4 | 2020 |
| ParticleGrid: Enabling Deep Learning using 3D Representation of Materials S Zaman, E Ferguson, C Pereira, D Akhivarov, M Araya-Polo, K Chiu 2022 IEEE 18th International Conference on e-Science (e-Science), 378-388, 2022 | 2 | 2022 |
| ParticleGrid: A Library for 3D Molecular Representation for Deep Learning S Zaman, K Chiu, E Ferguson, M Araya, D Akhiyarov, C Pereira APS March Meeting Abstracts 2022, G13. 005, 2022 | | 2022 |
| MoleculeFlow: A Deep Generative Workflow for 3D Molecular Generation E Ferguson, S Zaman, M Araya-Polo, D Akhiyarov, K Chiu, C Pereira ELLIS Machine Learning for Molecule Discovery Workshop, https://cloud.ml.jku …, 2021 | | 2021 |
| Multi-task deep reinforcement learning for molecular optimization Z DAI, D Akhiyarov, R Alami, D Pantano, M Araya-Polo, C Pereira ELLIS Machine Learning for Molecule Discovery Workshop, https://cloud.ml.jku …, 2021 | | 2021 |
| STRASS: A Light and Effective Method for Extractive Summarization Based on Sentence Embeddings [J] E NOVA ACL 1 (2), 243, 2019 | | 2019 |
| Nouvelles approches bioinformatiques pour l'étude ŕ grande échelle de l'évolution des activités enzymatiques C Pereira Université Paris Sud-Paris XI, 2015 | | 2015 |
| A new method for improving the prediction and the functional annotation of ortholog groups C Pereira, A Denise, O Lespinet Proc. ECCB'14, the 13th European Conference on Computational Biology, 2014 | | 2014 |
Ana ConesaInstitute for Integrative Systems Biology, Spanish National Research CouncilVerified email at csic.es
