Marek Kochańczyk

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Tomasz LipniackiInstitute of Fundamental Technological ResearchVerified email at ippt.gov.pl
frederic grabowskiInstitute of Fundamental Technological Research, PolandVerified email at ippt.pan.pl
Joanna Jaruszewicz-BłońskaPhD, Institute of Fundamental Technological ResearchVerified email at ippt.pan.pl
Pawel Jan ZukInstitute of Physical Chemistry PASVerified email at ichf.edu.pl
Michal BrylinskiLouisiana State UniversityVerified email at brylinski.org
William S. HlavacekTheoretical Division, Los Alamos National LaboratoryVerified email at lanl.gov
Stanisław GizińskiUniversity of WarsawVerified email at students.mimuw.edu.pl
Paweł Nałęcz-JaweckiPhD Student, Institute of Fundamental Technological Research, Polish Academy of Sciences (IPPT PAN)Verified email at student.uw.edu.pl
Marek KimmelProfessor of Statistics and Bioengineering, Rice UniversityVerified email at rice.edu
Allan BrasierUniversity of Wisconsin-MadisonVerified email at wisc.edu
Jakub PękalskiIPC Polish Academy of SciencesVerified email at ichf.edu.pl
Ryan KelloggStanford University School of MedicineVerified email at stanford.edu
SAVAS TAYUNIVERSITY OF CHICAGOVerified email at uchicago.edu
Breanne SpartaUniversity of California Los AngelesVerified email at ucla.edu
John AlbeckAssociate Professor of Molecular and Cellular Biology, University of California-DavisVerified email at ucdavis.edu
Emilia KozłowskaSilesian University of TechnologyVerified email at polsl.pl
Manuela BaccariniProfessor of Cell Signaling, University of ViennaVerified email at univie.ac.at
Jacek MiękiszUniversity of WarsawVerified email at mimuw.edu.pl
Paulina Szymańska-RożekFaculty of Mathematics, Informatics and Mechanics, University of WarsawVerified email at mimuw.edu.pl
Michael W ChanNational Chung Cheng University, TaiwanVerified email at ccu.edu.tw

Marek Kochańczyk

Other namesORCID: 0000-0003-1215-3920

IPPT PAN, Warsaw

Verified email at ippt.pan.pl - Homepage

quantitative biology nonlinear dynamics stochastic processes cellular decision-making innate immunity


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SARS-CoV-2 variant of concern 202012/01 has about twofold replicative advantage and acquires concerning mutations F Grabowski, G Preibisch, S Giziński, M Kochańczyk, T Lipniacki Viruses 13 (3), 392, 2021	110	2021
The spread of SARS-CoV-2 variant Omicron with a doubling time of 2.0–3.3 days can be explained by immune evasion F Grabowski, M Kochańczyk, T Lipniacki Viruses 14 (2), 294, 2022	97	2022
Cell fate in antiviral response arises in the crosstalk of IRF, NF-κB and JAK/STAT pathways M Czerkies, Z Korwek, W Prus, M Kochańczyk, J Jaruszewicz-Błońska, ... Nature Communications 9 (1), 493, 2018	87	2018
Spontaneous NF-κB activation by autocrine TNFα signaling: A computational analysis J Pękalski, PJ Zuk, M Kochańczyk, M Junkin, R Kellogg, S Tay, T Lipniacki PLOS ONE 8 (11), e78887, 2013	74	2013
Prediction of functional sites based on the fuzzy oil drop model M Bryliński, K Prymula, W Jurkowski, M Kochańczyk, E Stawowczyk, ... PLoS Computational Biology 3 (5), e94, 2007	67	2007
Relaxation oscillations and hierarchy of feedbacks in MAPK signaling M Kochańczyk, P Kocieniewski, E Kozłowska, J Jaruszewicz-Błońska, ... Scientific Reports 7, 38244, 2017	60	2017
Dynamics of COVID-19 pandemic at constant and time-dependent contact rates M Kochańczyk, F Grabowski, T Lipniacki Mathematical Modelling of Natural Phenomena 15, 28, 2020	58	2020
Super-spreading events initiated the exponential growth phase of COVID-19 with ℛ0 higher than initially estimated M Kochańczyk, F Grabowski, T Lipniacki Royal Society Open Science 7 (9), 200786, 2020	54	2020
Feedbacks, bifurcations, and cell fate decision-making in the p53 system B Hat, M Kochańczyk, MN Bogdał, T Lipniacki PLOS Computational Biology 12 (2), e1004787, 2016	53	2016
RAF1/BRAF dimerization integrates the signal from RAS to ERK and ROKα A Varga, K Ehrenreiter, B Aschenbrenner, P Kocieniewski, M Kochanczyk, ... Science Signaling 10 (469), eaai8482, 2017	51	2017
Pareto-based evaluation of national responses to COVID-19 pandemic shows that saving lives and protecting economy are non-trade-off objectives M Kochańczyk, T Lipniacki Scientific Reports 11 (1), 1-9, 2021	42	2021
Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate MN Bogdał, B Hat, M Kochańczyk, T Lipniacki BMC Systems Biology 7, 67, 2013	33	2013
Localization of ligand binding site in proteins identified in silico M Brylinski, M Kochanczyk, E Broniatowska, I Roterman Journal of Molecular Modeling 13 (6-7), 665-675, 2007	25	2007
A mathematical model of bimodal epigenetic control of miR-193a in ovarian cancer stem cells FHC Cheng, BD Aguda, JC Tsai, M Kochańczyk, JMJ Lin, GCW Chen, ... PLOS ONE 9 (12), e116050, 2014	23	2014
L18F substrain of SARS-CoV-2 VOC-202012/01 is rapidly spreading in England F Grabowski, M Kochańczyk, T Lipniacki MedRxiv, 2021.02. 07.21251262, 2021	22	2021
Information processing in the NF-κB pathway K Tudelska, J Markiewicz, M Kochańczyk, M Czerkies, W Prus, Z Korwek, ... Scientific Reports 7, 15926, 2017	21	2017
Stochastic transitions in a bistable reaction system on the membrane M Kochańczyk, J Jaruszewicz, T Lipniacki Journal of the Royal Society Interface 10 (84), 20130151, 2013	20	2013
Dynamics of a stochastic spatially extended system predicted by comparing deterministic and stochastic attractors of the corresponding birth-death process PJ Zuk, M Kochańczyk, J Jaruszewicz, W Bednorz, T Lipniacki Physical Biology 9 (5), 055002, 2012	19	2012
In silico structural study of random amino acid sequence proteins not present in nature K Prymula, M Piwowar, M Kochanczyk, L Flis, M Malawski, T Szepieniec, ... Chemistry & Biodiversity 6 (12), 2311-2336, 2009	16	2009
Importins promote high-frequency NF-κB oscillations increasing information channel capacity Z Korwek, K Tudelska, P Nałęcz-Jawecki, M Czerkies, W Prus, ... Biology Direct 11 (1), 61, 2016	14	2016

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