Seuraa
Yuanning Li (李远宁)
Yuanning Li (李远宁)
Institute of Marine Science and Technology, Shandong University
Vahvistettu sähköpostiosoite verkkotunnuksessa email.sdu.edu.cn
Nimike
Viittaukset
Viittaukset
Vuosi
ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference
JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas
PLoS biology 18 (12), e3001007, 2020
2302020
A genome-scale phylogeny of the kingdom Fungi
Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ...
Current Biology 31 (8), 1653-1665. e5, 2021
1892021
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ...
Science Advances 6 (45), eabd0079, 2020
1092020
Rooting the animal tree of life
Y Li, XX Shen, B Evans, CW Dunn, A Rokas
Molecular Biology and Evolution, msab170, 2021
1082021
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
JL Steenwyk, TJ Buida III, AL Labella, Y Li, XX Shen, A Rokas
Bioinformatics 37 (16), 2325-2331, 2021
752021
Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)
Y Li, KM Kocot, C Schander, SR Santos, DJ Thornhill, KM Halanych
Molecular Phylogenetics and Evolution 85, 221-229, 2015
682015
Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation
N Li, L Bao, T Zhou, Z Yuan, S Liu, R Dunham, Y Li, K Wang, X Xu, Y Jin, ...
BMC genomics 19, 1-16, 2018
472018
Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods
Y Li, KM Kocot, NV Whelan, SR Santos, DS Waits, DJ Thornhill, ...
Zoologica Scripta 46 (2), 200-213, 2017
462017
An investigation of irreproducibility in maximum likelihood phylogenetic inference
XX Shen, Y Li, CT Hittinger, X Chen, A Rokas
Nature communications 11 (1), 6096, 2020
452020
Endosymbiont genomes yield clues of tubeworm success
Y Li, MR Liles, KM Halanych
The ISME Journal 12 (11), 2785-2795, 2018
422018
Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size
L Kong, Y Li, KM Kocot, Y Yang, L Qi, Q Li, KM Halanych
Molecular phylogenetics and evolution 150, 106857, 2020
382020
Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus
JL Steenwyk, ME Mead, PA de Castro, C Valero, A Damasio, ...
Microbiology spectrum 9 (1), 10.1128/spectrum. 00010-21, 2021
362021
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi
Y Li, MG Tassia, DS Waits, VE Bogantes, KT David, KM Halanych
Bmc Biology 17, 1-14, 2019
352019
Mitogenomics reveals a novel genetic code in Hemichordata
Y Li, KM Kocot, MG Tassia, JT Cannon, M Bernt, KM Halanych
Genome biology and evolution 11 (1), 29-40, 2019
252019
A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina
M Groenewald, CT Hittinger, K Bensch, DA Opulente, XX Shen, Y Li, ...
Studies in Mycology 105 (1), 1-22, 2023
242023
Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome
AF Bernardino, Y Li, CR Smith, KM Halanych
Scientific reports 7 (1), 4295, 2017
232017
Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea)
MP Galaska, Y Li, KM Kocot, AR Mahon, KM Halanych
Molecular phylogenetics and evolution 130, 115-120, 2019
212019
Incongruence in the phylogenomics era
JL Steenwyk, Y Li, X Zhou, XX Shen, A Rokas
Nature Reviews Genetics 24 (12), 834-850, 2023
192023
Life in wood: preliminary phylogeny of deep-sea wood-boring bivalves (Xylophagaidae), with descriptions of three new genera and one new species
JR Voight, BA Marshall, J Judge, KM Halanych, Y Li, AF Bernardino, ...
Journal of Molluscan Studies 85 (2), 232-243, 2019
162019
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters
V Novitsky, JA Steingrimsson, M Howison, FS Gillani, Y Li, A Manne, ...
Scientific reports 10 (1), 18547, 2020
142020
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Artikkelit 1–20