| Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019 | 25 | 2019 |
| Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics 87, 37-49, 2018 | 14 | 2018 |
| popFBA: tackling intratumour heterogeneity with Flux Balance Analysis C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri Bioinformatics 33 (14), i311-i318, 2017 | 12 | 2017 |
| Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity A Graudenzi, D Maspero, F Angaroni, R Piazza, D Ramazzotti BioRxiv, 2020 | 9 | 2020 |
| Characterization of intra-host SARS-CoV-2 variants improves phylogenomic reconstruction and may reveal functionally convergent mutations D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ... bioRxiv, 2020 | 8 | 2020 |
| Longitudinal cancer evolution from single cells D Ramazzotti, F Angaroni, D Maspero, G Ascolani, I Castiglioni, R Piazza, ... bioRxiv, 2020 | 8 | 2020 |
| Cigarette smoke alters the transcriptome of non-involved lung tissue in lung adenocarcinoma patients G Pintarelli, S Noci, D Maspero, A Pettinicchio, M Dugo, L De Cecco, ... Scientific reports 9 (1), 1-10, 2019 | 7 | 2019 |
| Modeling spatio-temporal dynamics of metabolic networks with cellular automata and constraint-based methods A Graudenzi, D Maspero, C Damiani International Conference on Cellular Automata, 16-29, 2018 | 6 | 2018 |
| Quantification of intra-host genomic diversity of SARS-CoV-2 allows a high-resolution characterization of viral evolution and reveals functionally convergent variants D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ... bioRxiv, 2020 | 4 | 2020 |
| An optimal control framework for the automated design of personalized cancer treatments F Angaroni, A Graudenzi, M Rossignolo, D Maspero, T Calarco, R Piazza, ... Frontiers in bioengineering and biotechnology 8, 523, 2020 | 3 | 2020 |
| Integration of single-cell RNA-seq data into metabolic models to characterize tumour cell populations C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... bioRxiv, 256644, 2018 | 3 | 2018 |
| Read-through transcripts in lung: germline genetic regulation and correlation with the expression of other genes D Maspero, A Dassano, G Pintarelli, S Noci, L De Cecco, M Incarbone, ... Carcinogenesis 41 (7), 918-926, 2020 | 2 | 2020 |
| VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples D Ramazzotti, F Angaroni, D Maspero, C Gambacorti-Passerini, ... bioRxiv, 2020 | 2 | 2020 |
| MaREA4Galaxy: metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy C Damiani, L Rovida, D Maspero, I Sala, L Rosato, M Di Filippo, D Pescini, ... Computational and structural biotechnology journal 18, 993-999, 2020 | 2 | 2020 |
| Single-cell digital twins for cancer preclinical investigation M Di Filippo, C Damiani, M Vanoni, D Maspero, G Mauri, L Alberghina, ... Metabolic Flux Analysis in Eukaryotic Cells, 331-343, 2020 | 2 | 2020 |
| FBCA, A Multiscale Modeling Framework Combining Cellular Automata and Flux Balance Analysis. A Graudenzi, D Maspero, C Damiani Journal of Cellular Automata 15, 2020 | 2 | 2020 |
| The influence of nutrients diffusion on a metabolism-driven model of a multi-cellular system D Maspero, C Damiani, M Antoniotti, A Graudenzi, M Di Filippo, M Vanoni, ... Fundamenta Informaticae 171 (1-4), 279-295, 2020 | 2 | 2020 |
| Synchronization Effects in a Metabolism-Driven Model of Multi-cellular System D Maspero, A Graudenzi, S Singh, D Pescini, G Mauri, M Antoniotti, ... Italian Workshop on Artificial Life and Evolutionary Computation, 115-126, 2018 | 2 | 2018 |
| Personalized Therapy Design for Liquid Tumors via Optimal Control Theory F Angaroni, A Graudenzi, M Rossignolo, D Maspero, T Calarco, R Piazza, ... bioRxiv, 662858, 2019 | 1 | 2019 |
| A closed-loop optimization framework for personalized cancer therapy design F Angaroni, M Pennati, L Patruno, D Maspero, M Antoniotti, A Graudenzi 2020 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2020 | | 2020 |
Alex GraudenziInstitute of Molecular Bioimaging and Physiology, Consiglio Nazionale delle Ricerche (IBFM-CNR)Verified email at unimib.it
