| Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data H Lei, EM Gertz, AA Schäffer, X Fu, Y Tao, K Heselmeyer-Haddad, ... Bioinformatics 37 (24), 4704-4711, 2021 | 10 | 2021 |
| Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis Y Tao, H Lei, X Fu, AV Lee, J Ma, R Schwartz Bioinformatics 36 (Supplement_1), i407-i416, 2020 | 7 | 2020 |
| Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations X Fu, H Lei, Y Tao, R Schwartz Bioinformatics 38 (Supplement_1), i125-i133, 2022 | 6 | 2022 |
| Improving and evaluating deep learning models of cellular organization H Sun, X Fu, S Abraham, S Jin, RF Murphy Bioinformatics 38 (23), 5299-5306, 2022 | 4 | 2022 |
| ConTreeDP: A consensus method of tumor trees based on maximum directed partition support problem X Fu, R Schwartz 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 4 | 2021 |
| Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers X Fu, H Lei, Y Tao, K Heselmeyer-Haddad, I Torres, M Dean, T Ried, ... Journal of Computational Biology 28 (11), 1035-1051, 2021 | 3 | 2021 |
| Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV) NA Bristy, X Fu, R Schwartz bioRxiv, 2023.12. 07.570724, 2023 | 1 | 2023 |
| Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer H Lei, XA Guo, Y Tao, K Ding, X Fu, S Oesterreich, AV Lee, R Schwartz Bioinformatics 38 (Supplement_1), i386-i394, 2022 | 1 | 2022 |
| Integrating single nucleotide variants (SNVs), copy number alterations (CNAs), and structural variants (SVs) into single-cell clonal lineage inference N Bristy, X Fu, R Schwartz Cancer Research 84 (6_Supplement), 2326-2326, 2024 | | 2024 |
| Computational methods for optimizing marker selection, clonal lineage reconstruction, and longitudinal tracking of clonal dynamics via circulating tumor DNA (ctDNA) X Fu, Y Deng, Z Luo, W Laframboise, D Bartlett, R Schwartz Cancer Research 84 (6_Supplement), 2334-2334, 2024 | | 2024 |
| Marker selection strategies for circulating tumor DNA guided by phylogenetic inference X Fu, Z Luo, Y Deng, WA LaFramboise, D Bartlett, R Schwartz bioRxiv, 2024.03. 21.585352, 2024 | | 2024 |
| Improved deconvolution of combined bulk and single-cell RNA-sequencing data H Lei, XA Guo, Y Tao, K Ding, X Fu, S Oesterreich, AV Lee, R Schwartz Cancer Research 82 (12_Supplement), 5031-5031, 2022 | | 2022 |
| ConTreeDP: A consensus method of tumor trees based on maximum directed partition support problem X Fu, R Schwartz bioRxiv, 2021 | | 2021 |
