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Joseph N Paulson
Joseph N Paulson
DFCI, HSPH, PSU, Yale, UMD
Verified email at yale.edu - Homepage
Title
Cited by
Cited by
Year
Differential abundance analysis for microbial marker-gene surveys
JN Paulson, OC Stine, HC Bravo, M Pop
Nature Methods 10 (12), 1200-1202, 2013
20632013
Bioinformatics
AD Baxevanis, GD Bader, DS Wishart
John Wiley & Sons, 2020
11452020
A reference map of the human binary protein interactome
K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ...
Nature 580 (7803), 402-408, 2020
8582020
Multivariable association discovery in population-scale meta-omics studies
H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ...
PLoS computational biology 17 (11), e1009442, 2021
7802021
Polatuzumab vedotin in relapsed or refractory diffuse large B-cell lymphoma
LH Sehn, AF Herrera, CR Flowers, MK Kamdar, A McMillan, M Hertzberg, ...
Journal of Clinical Oncology 38 (2), 155, 2020
6542020
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ...
Science 366 (6465), 606-612, 2019
6382019
Simplified and representative bacterial community of maize roots
B Niu, JN Paulson, X Zheng, R Kolter
Proceedings of the National Academy of Sciences 114 (12), E2450-E2459, 2017
5162017
Understanding Tissue-Specific Gene Regulation
AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ...
Cell Reports 21 (4), 1077-1088, 2017
3572017
Sex differences in gene expression and regulatory networks across 29 human tissues
CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson, AR Sonawane, ...
Cell reports 31 (12), 2020
253*2020
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
M Pop, AW Walker, J Paulson, B Lindsay, M Antonio, MA Hossain, ...
Genome biology 15 (6), 1-12, 2014
2522014
Dynamic metabolic exchange governs a marine algal-bacterial interaction
E Segev, TP Wyche, KH Kim, J Petersen, C Ellebrandt, H Vlamakis, ...
eLife 5, e17473, 2016
2202016
metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
JN Paulson, M Pop, HC Bravo
205*2021
Exploring regulation in tissues with eQTL networks
M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ...
Proceedings of the National Academy of Sciences 114 (37), E7841-E7850, 2017
952017
Smooth Quantile Normalization
SC Hicks, K Okrah, JN Paulson, J Quackenbush, RA Irizarry, HC Bravo
Biostatistics 19 (2), 185–198, 2018
942018
Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment
M Pop, JN Paulson, S Chakraborty, I Astrovskaya, BR Lindsay, S Li, ...
BMC genomics 17, 1-11, 2016
742016
Cancer subtype identification using somatic mutation data
ML Kuijjer, JN Paulson, P Salzman, W Ding, J Quackenbush
British journal of cancer 118 (11), 1492-1501, 2018
732018
Temporal variations in cigarette tobacco bacterial community composition and tobacco-specific nitrosamine content are influenced by brand and storage conditions
J Chopyk, S Chattopadhyay, P Kulkarni, EM Smyth, LE Hittle, JN Paulson, ...
Frontiers in Microbiology 8, 358, 2017
572017
Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water
P Kulkarni, ND Olson, JN Paulson, M Pop, C Maddox, E Claye, ...
Science of the Total Environment 639, 1126-1137, 2018
532018
Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface
X Carette, J Platig, DC Young, M Helmel, AT Young, Z Wang, LP Potluri, ...
MBio 9 (2), 10.1128/mbio. 02333-17, 2018
522018
Regulatory network changes between cell lines and their tissues of origin
CM Lopes-Ramos, JN Paulson, CY Sonawane, ML Kuijjer, M Fagny, ...
BMC genomics 18 (1), 723, 2017
522017
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Articles 1–20