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Somenath Bakshi
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Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
S Bakshi, A Siryaporn, M Goulian, JC Weisshaar
Molecular microbiology 85 (1), 21-38, 2012
4762012
The spatial biology of transcription and translation in rapidly growing Escherichia coli
S Bakshi, H Choi, JC Weisshaar
Frontiers in microbiology 6, 145705, 2015
1202015
Time‐dependent effects of transcription‐ and translation‐halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes
S Bakshi, H Choi, J Mondal, JC Weisshaar
Molecular microbiology 94 (4), 871-887, 2014
1082014
Bacterial persisters are a stochastically formed subpopulation of low-energy cells
S Manuse, Y Shan, SJ Canas-Duarte, S Bakshi, WS Sun, H Mori, ...
PLoS biology 19 (4), e3001194, 2021
1012021
Localized permeabilization of E. coli membranes by the antimicrobial peptide Cecropin A
N Rangarajan, S Bakshi, JC Weisshaar
Biochemistry 52 (38), 6584-6594, 2013
822013
Subdiffraction-limit study of Kaede diffusion and spatial distribution in live Escherichia coli
S Bakshi, BP Bratton, JC Weisshaar
Biophysical journal 101 (10), 2535-2544, 2011
802011
Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence
S Bakshi, E Leoncini, C Baker, SJ Caņas-Duarte, B Okumus, J Paulsson
Nature Microbiology 6 (6), 783-791, 2021
752021
Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories
S Bakshi, RM Dalrymple, W Li, H Choi, JC Weisshaar
Biophysical journal 105 (12), 2676-2686, 2013
672013
Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells
B Okumus, D Landgraf, GC Lai, S Bakshi, JC Arias-Castro, S Yildiz, ...
Nature communications 7 (1), 11641, 2016
642016
Nonperturbative imaging of nucleoid morphology in live bacterial cells during an antimicrobial peptide attack
S Bakshi, H Choi, N Rangarajan, KJ Barns, BP Bratton, JC Weisshaar
Applied and environmental microbiology 80 (16), 4977-4986, 2014
542014
Stochastic antagonism between two proteins governs a bacterial cell fate switch
ND Lord, TM Norman, R Yuan, S Bakshi, R Losick, J Paulsson
Science 366 (6461), 116-120, 2019
512019
Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator
DT Riglar, DL Richmond, L Potvin-Trottier, AA Verdegaal, AD Naydich, ...
Nature communications 10 (1), 4665, 2019
502019
Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform
B Okumus, CJ Baker, JC Arias-Castro, GC Lai, E Leoncini, S Bakshi, ...
Nature protocols 13 (1), 170-194, 2018
282018
Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy
A Lepore, H Taylor, D Landgraf, B Okumus, S Jaramillo-Riveri, L McLaren, ...
Scientific reports 9 (1), 7902, 2019
262019
Divin: a small molecule inhibitor of bacterial divisome assembly
YJ Eun, M Zhou, D Kiekebusch, S Schlimpert, RR Trivedi, S Bakshi, ...
Journal of the American Chemical Society 135 (26), 9768-9776, 2013
182013
Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments
G Hardo, S Bakshi
Essays in Biochemistry 65 (1), 67-79, 2021
142021
Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks
G Hardo, M Noka, S Bakshi
BMC biology 20 (1), 263, 2022
52022
The context matrix: Navigating biological complexity for advanced biodesign
C Moschner, C Wedd, S Bakshi
Frontiers in Bioengineering and Biotechnology 10, 954707, 2022
42022
Next-generation quantitative and synthetic biology: High-sensitivity, high-accuracy, and digital approaches
B Okumus, JM Pedraza, S Bakshi
Frontiers in Bioengineering and Biotechnology 11, 1146729, 2023
12023
Protein Translation Can Fluidize Bacterial Cytoplasm
P Bera, W Abdul, S Bakshi, J Mondal
bioRxiv, 2024.01. 16.575857, 2024
2024
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Articles 1–20