| A standardized archaeal taxonomy for the Genome Taxonomy Database C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, AA Davín, DW Waite, ... Nature Microbiology 6 (7), 946-959, 2021 | 127 | 2021 |
| A rooted phylogeny resolves early bacterial evolution GA Coleman, AA Davín, TA Mahendrarajah, LL Szánthó, A Spang, ... Science 372 (6542), eabe0511, 2021 | 87 | 2021 |
| Genome-scale phylogenetic analysis finds extensive gene transfer among fungi GJ Szöllősi, AA Davín, E Tannier, V Daubin, B Boussau Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015 | 82 | 2015 |
| Gene transfers can date the tree of life AA Davín, E Tannier, TA Williams, B Boussau, V Daubin, GJ Szöllősi Nature ecology & evolution 2 (5), 904-909, 2018 | 51 | 2018 |
| Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages AA Davín, T Tricou, E Tannier, DM de Vienne, GJ Szöllősi Bioinformatics 36 (4), 1286-1288, 2020 | 23 | 2020 |
| RecPhyloXML: a format for reconciled gene trees W Duchemin, G Gence, AM Arigon Chifolleau, L Arvestad, MS Bansal, ... Bioinformatics 34 (21), 3646-3652, 2018 | 18 | 2018 |
| MaxTiC: Fast ranking of a phylogenetic tree by Maximum Time Consistency with lateral gene transfers C Chauve, A Rafiey, AA Davin, C Scornavacca, P Veber, B Boussau, ... bioRxiv, 127548, 2017 | 13 | 2017 |
| Resolving widespread incomplete and uneven archaeal classifications based on a rank-normalized genome-based taxonomy C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, AA Davin, DW Waite, ... bioRxiv, 2020.03. 01.972265, 2020 | 7 | 2020 |
| Zombi: A simulator of species, genes and genomes that accounts for extinct lineages AA Davín, T Tricou, E Tannier, DM de Vienne, GJ Szöllősi bioRxiv, 339473, 2018 | 5 | 2018 |
| Ancestral genome organization as a diagnosis tool for phylogenomics E Tannier, A Bazin, A Davín, L Guéguen, S Bérard, C Chauve Phylogenetics in the Genomic Era, 2.5: 1--2.5: 19, 2020 | 4 | 2020 |
| Rooting Species Trees Using Gene Tree-Species Tree Reconciliation BJ Harris, PO Sheridan, AA Davín, C Gubry-Rangin, GJ Szöllősi, ... Environmental Microbial Evolution: Methods and Protocols, 189-211, 2022 | 1 | 2022 |
| Gene transfers, like fossils, can date the tree of life AA Davín, E Tannier, TA Williams, B Boussau, V Daubin, GJ Szöllősi Biorxiv, 193813, 2017 | 1 | 2017 |
| Dating with transfers A Davín, GJ Szöllosi, E Tannier, B Boussau, V Daubin Journées Ouvertes Biologie Informatique Mathématiques, 2016 | 1 | 2016 |
| ATP synthase evolution on a cross-braced dated tree of life TA Mahendrarajah, ERR Moody, D Schrempf, LL Szantho, N Dombrowski, ... bioRxiv, 2023.04. 11.536006, 2023 | | 2023 |
| The power and limitations of species tree-aware phylogenetics TA Williams, AA Davin, B Morel, LL Szantho, A Spang, A Stamatakis, ... bioRxiv, 2023.03. 17.533068, 2023 | | 2023 |
| Relative Time Inference Using Lateral Gene Transfers AA Davín, D Schrempf, TA Williams, P Hugenholtz, GJ Szöllősi Environmental Microbial Evolution: Methods and Protocols, 75-94, 2022 | | 2022 |
| Rooting species trees using gene tree-species tree reconciliation JH Brogan, P Sheridan, AA Davín, C Gubry-Rangin, GJ Szöllősi, ... Environmental Microbial Evolution, 2022 | | 2022 |
| Les nouveautés de HAL v3. 0 de A ŕ Z (14/10/14) JL Charvet, L Nalpas, B Borderie, R Dayras, D Dore | | |
| Hugenholtz, P., Szöllősi, GJ, & Williams, T.(2021). A rooted phylogeny resolves early bacterial evolution. Science, 372 (6542),[eabe0511]. https://doi. org/10.1126/science. abe0511 G Coleman, AA Davín, T Mahendrarajah, L Szantho, A Spang | | |
| Bioinformatics: Application note AA Davín, T Tricou, E Tannier, DM de Vienne, GJ Sz | | |
