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Alan R. Pacheco
Alan R. Pacheco
Verified email at biol.ethz.ch
Title
Cited by
Cited by
Year
A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells
BM Maoz, A Herland, EA FitzGerald, T Grevesse, C Vidoudez, ...
Nature biotechnology 36 (9), 865, 2018
3662018
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
AR Pacheco, M Moel, D Segrč
Nature communications 10 (1), 103, 2019
2452019
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ...
Nature Protocols, 1-58, 2021
95*2021
A multidimensional perspective on microbial interactions
AR Pacheco, D Segrč
FEMS Microbiology Letters, 2019
722019
Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli
J Beal, T Haddock-Angelli, M Gershater, K De Mora, M Lizarazo, ...
PloS one 11 (3), e0150182, 2016
532016
Non-additive microbial community responses to environmental complexity
AR Pacheco, ML Osborne, D Segrč
Nature communications 12 (1), 2365, 2021
51*2021
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling
NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ...
mSystems 6 (6), e00599-21, 2021
162021
Metabolic interaction models recapitulate leaf microbiota ecology
M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller, CM Field, E Vayena, ...
Science 381 (6653), eadf5121, 2023
152023
An evolutionary algorithm for designing microbial communities via environmental modification
AR Pacheco, D Segrč
Journal of the Royal Society Interface 18 (179), 20210348, 2021
122021
Toward FAIR Representations of Microbial Interactions
AR Pacheco, C Pauvert, D Kishore, D Segrč
Msystems 7 (5), e00659-22, 2022
72022
Stoichiometric modeling of artificial string chemistries reveals constraints on metabolic network structure
D Moyer, AR Pacheco, DB Bernstein, D Segrč
Journal of Molecular Evolution 89 (7), 472-483, 2021
6*2021
Resolving metabolic interaction mechanisms in plant microbiomes
AR Pacheco, JA Vorholt
Current Opinion in Microbiology 74, 102317, 2023
42023
From microbiome composition to functional engineering, one step at a time
SD Burz, S Causevic, A Dal Co, M Dmitrijeva, P Engel, D Garrido-Sanz, ...
Microbiology and Molecular Biology Reviews 87 (4), e00063-23, 2023
32023
Environmental modulation of microbial ecosystems
AR Pacheco
2021
BBF RFC 94: Type IIS Assembly for Bacterial Transcriptional Units: A Standardized Assembly Method for Building Bacterial Transcriptional Units Using the Type IIS Restriction …
TL Haddock, DM Densmore, E Appleton, S Carr, S Iverson, M De Freitas, ...
2015
Towards integrated rhizosphere microbial community modeling through bottom-up COMETS genome-scale metabolic simulations and top-down data analysis
I Dukovski, D Segrč
Genetic Systems Engineering
P Vaidyanathan, E Appleton, C Madsen, CI Vasile, A Pacheco, I Haghighi, ...
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