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Lokendra Poudel
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Molecular mechanism and binding free energy of doxorubicin intercalation in DNA
B Jawad, L Poudel, R Podgornik, NF Steinmetz, WY Ching
Physical chemistry chemical physics 21 (7), 3877-3893, 2019
902019
Implication of the solvent effect, metal ions and topology in the electronic structure and hydrogen bonding of human telomeric G-quadruplex DNA
L Poudel, NF Steinmetz, RH French, VA Parsegian, R Podgornik, ...
Physical Chemistry Chemical Physics 18 (31), 21573-21585, 2016
462016
The hydration effect and selectivity of alkali metal ions on poly (ethylene glycol) models in cyclic and linear topology
L Poudel, R Podgornik, WY Ching
The Journal of Physical Chemistry A 121 (24), 4721-4731, 2017
362017
Electronic structure, stacking energy, partial charge, and hydrogen bonding in four periodic B-DNA models
L Poudel, P Rulis, L Liang, WY Ching
Physical Review E 90 (2), 022705, 2014
342014
Impact of hydrogen bonding in the binding site between capsid protein and MS2 bacteriophage ssRNA
L Poudel, R Twarock, NF Steinmetz, R Podgornik, WY Ching
The Journal of Physical Chemistry B 121 (26), 6321-6330, 2017
332017
Atomic-Scale Quantification of Interfacial Binding Between Peptides and Inorganic Crystals: The Case of Calcium Carbonate Binding Peptide on Aragonite
L Poudel, C Tamerler, A Misra, WY Ching
The Journal of Physical Chemistry C, 2017
322017
Electronic structure and partial charge distribution of doxorubicin in different molecular environments
L Poudel, AM Wen, RH French, VA Parsegian, R Podgornik, NF Steinmetz, ...
ChemPhysChem 16 (7), 1451-1460, 2015
312015
Thermodynamic dissection of the intercalation binding process of doxorubicin to dsDNA with implications of ionic and solvent effects
B Jawad, L Poudel, R Podgornik, WY Ching
The Journal of Physical Chemistry B 124 (36), 7803-7818, 2020
272020
van der Waals interactions on the mesoscale: Open-science implementation, anisotropy, retardation, and solvent effects
DM Dryden, JC Hopkins, LK Denoyer, L Poudel, NF Steinmetz, WY Ching, ...
Langmuir 31 (37), 10145-10153, 2015
252015
Optical properties and electronic transitions of DNA oligonucleotides as a function of composition and stacking sequence
JB Schimelman, DM Dryden, L Poudel, KE Krawiec, Y Ma, R Podgornik, ...
Physical Chemistry Chemical Physics 17 (6), 4589-4599, 2015
252015
Synthesis of monodisperse rod-shaped silica particles through biotemplating of surface-functionalized bacteria
H Ping, L Poudel, H Xie, W Fang, Z Zou, P Zhai, W Wagermaier, P Fratzl, ...
Nanoscale 12 (16), 8732-8741, 2020
102020
Interfacial interaction between suolunite crystal and silica binding peptide for novel bioinspired cement
WY Ching, L Poudel, S San, K Baral
ACS Combinatorial Science 21 (12), 794-804, 2019
92019
Interaction between Capsid Coat Protein and MS2 Bacteriophage SSRNA with Different Loop Motif for Virus Assembly Process
L Poudel, WY Ching
Biophysical Journal 114 (3), 252a, 2018
52018
Molecular Dynamic and Free Energy Analysis of Doxorubicin and DNA Complex
B Jawad, L Poudel, WY Ching
Biophysical Journal 114 (3), 528a, 2018
32018
Mechanisms by which small molecules of diverse chemotypes arrest Sec14 lipid transfer activity
XR Chen, L Poudel, Z Hong, P Johnen, S Katti, A Tripathi, AH Nile, ...
Journal of Biological Chemistry 299 (2), 2023
12023
Mechanisms by Which Small Molecule Inhibitors Arrest Sec14 Phosphatidylinositol Transfer Protein Activity
XR Chen, L Poudel, Z Hong, P Johnen, SS Katti, A Tripathi, AH Nile, ...
bioRxiv, 2022.08. 01.502361, 2022
2022
Mechanism of diacylglycerol sensing revealed by integrative structural biology approach
SS Katti, IV Krieger, L Poudel, JS Sacchettini, TI Igumenova
Biophysical Journal 121 (3), 224a, 2022
2022
Deciphering of Packing Signal Hypothesis in Bacterophage RNA Recognition by the MS2 Capsid Protein in Virus Assembly
L Poudel
University of Missouri-Kansas City, 2018
2018
Publisher's Note: Electronic structure, stacking energy, partial charge, and hydrogen bonding in four periodic B-DNA models [Phys. Rev. E 90, 022705 (2014)]
L Poudel, P Rulis, L Liang, WY Ching
Physical Review E 90 (2), 029902, 2014
2014
Electronic structure and partial charge distribution of doxorubicin under different molecular environments
L Poudel
University of Missouri-Kansas City, 2014
2014
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