| Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017 | 287 | 2017 |
| Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544-551, 2016 | 188 | 2016 |
| Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ... FEMS Yeast Research 17 (7), fox074, 2017 | 93 | 2017 |
| Mycobacterium tuberculosis whole genome sequences from Southern India suggest novel resistance mechanisms and the need for region-specific diagnostics AL Manson, T Abeel, JE Galagan, JC Sundaramurthi, A Salazar, ... Clinical Infectious Diseases 64 (11), 1494-1501, 2017 | 65 | 2017 |
| Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, AR Gorter de Vries, M Van Den Broek, N Brouwers, ... BMC genomics 20, 1-18, 2019 | 49 | 2019 |
| Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions AR Gorter de Vries, MA Voskamp, ACA Van Aalst, LH Kristensen, ... Frontiers in Genetics 10, 242, 2019 | 45 | 2019 |
| Engineered phage with antibacterial CRISPR–Cas selectively reduce E. coli burden in mice YE Gencay, D Jasinskytė, C Robert, S Semsey, V Martínez, AØ Petersen, ... Nature Biotechnology 42 (2), 265-274, 2024 | 27 | 2024 |
| An educational guide for nanopore sequencing in the classroom AN Salazar, FL Nobrega, C Anyansi, C Aparicio-Maldonado, AR Costa, ... PLoS computational biology 16 (1), e1007314, 2020 | 19 | 2020 |
| Nanopore sequencing and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization AN Salazar, AR Gorter de Vries, M van den Broek, N Brouwers, ... bioRxiv, 603480, 2019 | 8 | 2019 |
| Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations AN Salazar, T Abeel Bioinformatics 34 (17), i732-i742, 2018 | 8 | 2018 |
| Salazar, C C Salazar | 8 | 2015 |
| Normalizing alternate representations of large sequence variants across multiple bacterial genomes A Salazar, A Earl, C Desjardins, T Abeel BMC Bioinformatics 16 (Suppl 2), A8, 2015 | 4 | 2015 |
| Alpaca: a kmer-based approach for investigating mosaic structures in microbial genomes AN Salazar, T Abeel bioRxiv, 551234, 2019 | 2 | 2019 |
| An AluYb8 retrotransposon characterises a risk haplotype of TMEM106B associated in neurodegeneration A Salazar, N Tesi, L Knoop, Y Pijnenburg, S van der Lee, S Wijesekera, ... medRxiv, 2023.07. 16.23292721, 2023 | 1 | 2023 |
| An AluYb8 mobile element further characterises a risk haplotype of TMEM106B associated in neurodegeneration A Salazar, N Tesi, M Hulsman, L Knoop, S van der Lee, S Wijesekera, ... | 1 | 2023 |
| Characterising tandem repeat complexities across long-read sequencing platforms with TREAT N Tesi Sr, A Salazar, Y Zhang, S van der Lee, M Hulsman, L Knoop, ... bioRxiv, 2024.03. 15.585288, 2024 | | 2024 |
| MotifScope: a multi-sample motif discovery and visualization tool for tandem repeats Y Zhang, M Hulsman, A Salazar, N Tesi, L Knoop, S van der Lee, ... bioRxiv, 2024.03. 06.583591, 2024 | | 2024 |
| Long‐read sequencing of the whole‐blood compartment reveals similar telomere lengths between Alzheimer’s disease patients and cognitively‐healthy centenarians AN Salazar, N Tesi, M Hulsman, H Holstege, L Knoop, S Wijesekera Alzheimer's & Dementia 19, e076202, 2023 | | 2023 |
| Replication of HLA‐DRB1* 04: 04 allele subtype protective effect against Alzheimer’s Disease in cognitively healthy centenarians using long‐read sequencing DA Sirvent, AN Salazar, N Tesi, M Hulsman, SJ van der Lee, ... Alzheimer's & Dementia 19, e082981, 2023 | | 2023 |
| Whole-Genome Sequencing of 11 High-Risk Clone ST111 Pseudomonas aeruginosa Isolates from French Hospitals M Anbo, MAT Chichkova, YE Gençay, A Salazar, K Jeannot, L Jelsbak Microbiology Resource Announcements 12 (7), e00091-23, 2023 | | 2023 |
