Anna Vähärautio
Anna Vähärautio
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Counting absolute numbers of molecules using unique molecular identifiers
T Kivioja, A Vähärautio, K Karlsson, M Bonke, M Enge, S Linnarsson, ...
Nature methods 9 (1), 72-74, 2012
Regulation of the human p21 (waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D 3 receptor
A Saramäki, CM Banwell, MJ Campbell, C Carlberg
Nucleic acids research 34 (2), 543-554, 2006
Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors
IK Sur, O Hallikas, A Vähärautio, J Yan, M Turunen, M Enge, M Taipale, ...
Science 338 (6112), 1360-1363, 2012
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ...
Nature communications 5 (1), 4737, 2014
Integrated data analysis reveals uterine leiomyoma subtypes with distinct driver pathways and biomarkers
M Mehine, E Kaasinen, HR Heinonen, N Mäkinen, K Kämpjärvi, ...
Proceedings of the National Academy of Sciences 113 (5), 1315-1320, 2016
Uterine leiomyoma-linked MED12 mutations disrupt mediator-associated CDK activity
M Turunen, JM Spaeth, S Keskitalo, MJ Park, T Kivioja, AD Clark, ...
Cell reports 7 (3), 654-660, 2014
Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1α, 25-dihydroxyvitamin D3
A Saramaki, S Diermeier, R Kellner, H Laitinen, S Vaisanen, C Carlberg
Journal of Biological Chemistry 284 (12), 8073-8082, 2009
A Functional Homologous Recombination Assay Predicts Primary Chemotherapy Response and Long-Term Survival in Ovarian Cancer PatientsFunctional HRD Predicts Clinical Outcome in …
M Tumiati, S Hietanen, J Hynninen, E Pietilä, A Färkkilä, K Kaipio, ...
Clinical Cancer Research 24 (18), 4482-4493, 2018
Distinct HDACs regulate the transcriptional response of human cyclin-dependent kinase inhibitor genes to trichostatin A and 1α,25-dihydroxyvitamin D 3
M Malinen, A Saramäki, A Ropponen, T Degenhardt, S Väisänen, ...
Nucleic acids research 36 (1), 121-132, 2008
Identification of single nucleotide polymorphisms in the p21 (CDKN1A) gene and correlations with longevity in the Italian population
IBR Silvia Gravina , Francesco Lescai , Gregory Hurteau , Graham J. Brock ...
Aging (Albany NY) 1 (5), 470—480, 2009
Controlling the chromatin organization of vitamin D target genes by multiple vitamin D receptor binding sites
C Carlberg, TW Dunlop, A Saramäki, L Sinkkonen, M Matilainen, ...
The Journal of steroid biochemistry and molecular biology 103 (3-5), 338-343, 2007
Transcriptional networks controlling the cell cycle
M Bonke, M Turunen, M Sokolova, A Vähärautio, T Kivioja, M Taipale, ...
G3: Genes| Genomes| Genetics 3 (1), 75-90, 2013
Contribution of allelic imbalance to colorectal cancer
K Palin, E Pitkänen, M Turunen, B Sahu, P Pihlajamaa, T Kivioja, ...
Nature communications 9 (1), 3664, 2018
Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletion
M Sokolova, M Turunen, O Mortusewicz, T Kivioja, P Herr, A Vähärautio, ...
Cell cycle 16 (2), 189-199, 2017
Cancer by super-enhancer
A Vähärautio, J Taipale
Science 346 (6215), 1291-1292, 2014
Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer
K Zhang, EP Erkan, S Jamalzadeh, J Dai, N Andersson, K Kaipio, ...
Science advances 8 (8), eabm1831, 2022
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
AA Hippen, MM Falco, LM Weber, EP Erkan, K Zhang, JA Doherty, ...
PLOS Computational Biology 17 (8), e1009290, 2021
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples
A Häkkinen, K Zhang, A Alkodsi, N Andersson, EP Erkan, J Dai, K Kaipio, ...
Bioinformatics 37 (18), 2882-2888, 2021
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer
L He, D Bulanova, J Oikkonen, A Häkkinen, K Zhang, S Zheng, W Wang, ...
Briefings in bioinformatics 22 (6), bbab272, 2021
Upregulation of ribosome biogenesis via canonical E-boxes is required for Myc-driven proliferation
N Zielke, A Vähärautio, J Liu, T Kivioja, J Taipale
Developmental Cell 57 (8), 1024-1036. e5, 2022
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