Marnix Medema
Title
Cited by
Cited by
Year
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ...
Nucleic acids research 43 (W1), W237-W243, 2015
16892015
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ...
Nucleic Acids Research 39 (suppl 2), W339, 2011
13232011
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
K Blin, S Shaw, K Steinke, R Villebro, N Ziemert, SY Lee, MH Medema, ...
Nucleic acids research 47 (W1), W81-W87, 2019
12182019
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ...
Nucleic acids research 45 (W1), W36-W41, 2017
8962017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers
K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ...
Nucleic acids research 41 (W1), W204-W212, 2013
8342013
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
P Cimermancic, MH Medema, J Claesen, K Kurita, LCW Brown, ...
Cell 158 (2), 412-421, 2014
6202014
NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity
M Röttig, MH Medema, K Blin, T Weber, C Rausch, O Kohlbacher
Nucleic Acids Research 39 (suppl 2), W362, 2011
5572011
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
5352015
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
5302018
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea
KF Ettwig, S Shima, KT Van De Pas‐Schoonen, J Kahnt, MH Medema, ...
Environmental microbiology 10 (11), 3164-3173, 2008
4282008
Computational approaches to natural product discovery
MH Medema, MA Fischbach
Nature chemical biology 11 (9), 639-648, 2015
3082015
Detecting sequence homology at the gene cluster level with MultiGeneBlast
MH Medema, E Takano, R Breitling
Molecular biology and evolution 30 (5), 1218-1223, 2013
2582013
MS/MS networking guided analysis of molecule and gene cluster families
DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ...
Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013
2302013
Computational tools for the synthetic design of biochemical pathways
MH Medema, R Van Raaphorst, E Takano, R Breitling
Nature Reviews Microbiology 10 (3), 191-202, 2012
2222012
A computational framework to explore large-scale biosynthetic diversity
JC Navarro-Muñoz, N Selem-Mojica, MW Mullowney, SA Kautsar, ...
Nature chemical biology 16 (1), 60-68, 2020
206*2020
The sequence of a 1.8-Mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways
MH Medema, A Trefzer, A Kovalchuk, M van den Berg, U Müller, W Heijne, ...
Genome biology and evolution 2, 212, 2010
1982010
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
VJ Carrión, J Perez-Jaramillo, V Cordovez, V Tracanna, M De Hollander, ...
Science 366 (6465), 606-612, 2019
1902019
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms
MH Medema, R Breitling, R Bovenberg, E Takano
Nature Reviews Microbiology 9 (2), 131-137, 2011
1872011
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
K Blin, MH Medema, R Kottmann, SY Lee, T Weber
Nucleic acids research, gkw960, 2016
1822016
MIBiG 2.0: a repository for biosynthetic gene clusters of known function
SA Kautsar, K Blin, S Shaw, JC Navarro-Muñoz, BR Terlouw, ...
Nucleic acids research 48 (D1), D454-D458, 2020
1612020
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