| Redundans: an assembly pipeline for highly heterozygous genomes LP Pryszcz, T Gabaldón Nucleic acids research 44 (12), e113-e113, 2016 | 485 | 2016 |
| PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, M Marcet-Houben, ... Nucleic acids research 42 (D1), D897-D902, 2014 | 255 | 2014 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 232 | 2016 |
| Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ... Nature biotechnology 39 (10), 1278-1291, 2021 | 209 | 2021 |
| PhylomeDB v3. 0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, I Denisov, D Kormes, ... Nucleic acids research 39 (suppl_1), D556-D560, 2010 | 185 | 2010 |
| Ancient Dispersal of the Human Fungal Pathogen Cryptococcus gattii from the Amazon Rainforest F Hagen, PC Ceresini, I Polacheck, H Ma, F Nieuwerburgh, T Gabaldón, ... PloS one 8 (8), e71148, 2013 | 164 | 2013 |
| MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score LP Pryszcz, J Huerta-Cepas, T Gabaldon Nucleic acids research 39 (5), e32-e32, 2011 | 155 | 2011 |
| Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies LP Pryszcz, T Nemeth, A Gacser, T Gabaldon Genome biology and evolution 6 (5), 1069-1078, 2014 | 112 | 2014 |
| The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis LP Pryszcz, T Németh, E Saus, E Ksiezopolska, E Hegedűsová, J Nosek, ... PLoS genetics 11 (10), e1005626, 2015 | 104 | 2015 |
| Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing MC Lucas, LP Pryszcz, R Medina, I Milenkovic, N Camacho, V Marchand, ... Nature Biotechnology 42 (1), 72-86, 2024 | 78 | 2024 |
| Unexpected Genomic Variability in Clinical and Environmental Strains of the Pathogenic Yeast Candida parapsilosis LP Pryszcz, T Nemeth, A Gacser, T Gabaldon Genome biology and evolution 5 (12), 2382-2392, 2013 | 73 | 2013 |
| Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal-to-zygotic transition CL Winata, M Łapiński, L Pryszcz, C Vaz, MH bin Ismail, S Nama, ... Development 145 (1), dev159566, 2018 | 55 | 2018 |
| MasterOfPores: a workflow for the analysis of oxford nanopore direct RNA sequencing datasets L Cozzuto, H Liu, LP Pryszcz, TH Pulido, A Delgado-Tejedor, ... Frontiers in genetics 11, 211, 2020 | 50 | 2020 |
| Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing P González-Torres, LP Pryszcz, F Santos, M Martínez-García, T Gabaldón, ... Applied and environmental microbiology 81 (24), 8445-8456, 2015 | 33 | 2015 |
| Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination M Pawełkowicz, L Pryszcz, A Skarzyńska, RK Wóycicki, K Posyniak, ... Plant reproduction 32, 193-216, 2019 | 29 | 2019 |
| Mitochondrial genome variability within the Candida parapsilosis species complex M Valach, LP Pryszcz, L Tomaska, A Gacser, T Gabaldón, J Nosek Mitochondrion 12 (5), 514-519, 2012 | 28 | 2012 |
| MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life U Chorostecki, M Molina, LP Pryszcz, T Gabaldón Nucleic acids research 48 (W1), W553-W557, 2020 | 27 | 2020 |
| nextPARS: parallel probing of RNA structures in Illumina E Saus, JR Willis, LP Pryszcz, A Hafez, C Llorens, H Himmelbauer, ... RNA 24 (4), 609-619, 2018 | 26 | 2018 |
| Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans G Gérecová, M Neboháčová, I Zeman, LP Pryszcz, Ľ Tomáška, ... FEMS Yeast Research 15 (3), fov006, 2015 | 26 | 2015 |
| Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast A Masgrau, A Battola, T Sanmartin, LP Pryszcz, T Gabaldón, M Mendoza Molecular biology of the cell 28 (22), 3082-3094, 2017 | 23 | 2017 |
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
