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Kaiyuan Zhu
Kaiyuan Zhu
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Sketching algorithms for genomic data analysis and querying in a secure enclave
C Kockan, K Zhu, N Dokmai, N Karpov, MO Kulekci, DP Woodruff, ...
Nature methods 17 (3), 295-301, 2020
602020
Privacy-preserving genotype imputation in a trusted execution environment
N Dokmai, C Kockan, K Zhu, XF Wang, SC Sahinalp, H Cho
Cell Systems 12 (10), 983-993. e7, 2021
232021
Optimal compressed representation of high throughput sequence data via light assembly
AA Ginart, J Hui, K Zhu, I Numanagić, TA Courtade, SC Sahinalp, DN Tse
Nature communications 9 (1), 566, 2018
212018
Combinatorial detection of conserved alteration patterns for identifying cancer subnetworks
E Hodzic, R Shrestha, K Zhu, K Cheng, CC Collins, S Cenk Sahinalp
GigaScience 8 (4), giz024, 2019
92019
Strain level microbial detection and quantification with applications to single cell metagenomics
K Zhu, AA Schäffer, W Robinson, J Xu, E Ruppin, AF Ergun, Y Ye, ...
Nature Communications 13 (1), 1-19, 2022
82022
A graph-based approach for proteoform identification and quantification using top-down homogeneous multiplexed tandem mass spectra
K Zhu, X Liu
BMC bioinformatics 19, 77-84, 2018
42018
Genomic Data Compression.
K Zhu, I Numanagic, SC Sahinalp
Encyclopedia of Big Data Technologies, 2019
22019
CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
K Zhu, MG Jones, J Luebeck, X Bu, H Yi, KL Hung, ITL Wong, S Zhang, ...
bioRxiv, 2024.02. 15.580594, 2024
2024
Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change
SR Dehkordi, ITL Wong, J Ni, J Luebeck, K Zhu, G Prasad, ...
bioRxiv, 2023.12. 12.571349, 2023
2023
scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations
W Robinson, JK Stone, F Schischlik, B Gasmi, MC Kelly, C Seibert, ...
bioRxiv, 2020.05. 14.096230, 2020
2020
Approximating Max NAE-k-SAT by anonymous local search
A Xian, K Zhu, D Zhu, L Pu, H Liu
Theoretical Computer Science 657, 54-63, 2017
2017
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Articles 1–11