Paul Giresi
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
JD Buenrostro, PG Giresi, LC Zaba, HY Chang, WJ Greenleaf
Nature methods 10 (12), 1213-1218, 2013
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
PG Giresi, J Kim, RM McDaniell, VR Iyer, JD Lieb
Genome research 17 (6), 877-885, 2007
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
AT Satpathy, JM Granja, KE Yost, Y Qi, F Meschi, GP McDermott, ...
Nature biotechnology 37 (8), 925-936, 2019
A map of open chromatin in human pancreatic islets
KJ Gaulton, T Nammo, L Pasquali, JM Simon, PG Giresi, MP Fogarty, ...
Nature genetics 42 (3), 255-259, 2010
Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons
OL Wapinski, T Vierbuchen, K Qu, QY Lee, S Chanda, DR Fuentes, ...
Cell 155 (3), 621-635, 2013
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ...
Genome research 21 (10), 1757-1767, 2011
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
JM Simon, PG Giresi, IJ Davis, JD Lieb
Nature protocols 7 (2), 256-267, 2012
Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle
EJ Stevenson, PG Giresi, A Koncarevic, SC Kandarian
The Journal of physiology 551 (1), 33-48, 2003
Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae
A Azvolinsky, PG Giresi, JD Lieb, VA Zakian
Molecular cell 34 (6), 722-734, 2009
Identification of a molecular signature of sarcopenia
PG Giresi, EJ Stevenson, J Theilhaber, A Koncarevic, J Parkington, ...
Physiological genomics 21 (2), 253-263, 2005
Isolation of Active Regulatory Elements from Eukaryotic Chromatin Using FAIRE (Formaldehyde‐Assisted Isolation of Regulatory Elements)
PG Giresi, JD Lieb
Tag‐Based Next Generation Sequencing, 243-255, 2011
Transposition of native chromatin for personal epigenomics
P Giresi, JD Buenrostro, HY Chang, WJ Greenleaf
US Patent 10,059,989, 2018
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions
NU Rashid, PG Giresi, JG Ibrahim, W Sun, JD Lieb
Genome biology 12, 1-20, 2011
Repression of stress-induced LINE-1 expression protects cancer cell subpopulations from lethal drug exposure
GD Guler, CA Tindell, R Pitti, C Wilson, K Nichols, TKW Cheung, HJ Kim, ...
Cancer cell 32 (2), 221-237. e13, 2017
Chromatin accessibility landscape of cutaneous T cell lymphoma and dynamic response to HDAC inhibitors
K Qu, LC Zaba, AT Satpathy, PG Giresi, R Li, Y Jin, R Armstrong, C Jin, ...
Cancer cell 32 (1), 27-41. e4, 2017
Individuality and variation of personal regulomes in primary human T cells
K Qu, LC Zaba, PG Giresi, R Li, M Longmire, YH Kim, WJ Greenleaf, ...
Cell systems 1 (1), 51-61, 2015
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
X Bao, AJ Rubin, K Qu, J Zhang, PG Giresi, HY Chang, PA Khavari
Genome biology 16 (1), 1-17, 2015
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation
S Ercan, PG Giresi, CM Whittle, X Zhang, RD Green, JD Lieb
Nature genetics 39 (3), 403-408, 2007
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