Jukka Sirén
Jukka Sirén
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Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
J Corander, P Marttinen, J Sirén, J Tang
BMC bioinformatics 9, 1-14, 2008
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander
Molecular biology and evolution 30 (5), 1224-1228, 2013
Bayesian spatial modeling of genetic population structure
J Corander, J Sirén, E Arjas
Computational Statistics 23, 111-129, 2008
Restricted gene flow among hospital subpopulations of Enterococcus faecium
RJL Willems, J Top, W van Schaik, H Leavis, M Bonten, J Sirén, ...
MBio 3 (4), 10.1128/mbio. 00151-12, 2012
Predictable allele frequency changes due to habitat fragmentation in the Glanville fritillary butterfly
T Fountain, M Nieminen, J Sirén, SC Wong, R Lehtonen, I Hanski
Proceedings of the National Academy of Sciences 113 (10), 2678-2683, 2016
Reconstructing population histories from single nucleotide polymorphism data
J Sirén, P Marttinen, J Corander
Molecular biology and evolution 28 (1), 673-683, 2011
Using Bayes’ theorem in behavioural crime linking of serial homicide
B Salo, J Sirén, J Corander, A Zappalà, D Bosco, A Mokros, P Santtila
Legal and Criminological Psychology 18 (2), 356-370, 2013
Using offender crime scene behavior to link stranger sexual assaults: A comparison of three statistical approaches
M Tonkin, T Pakkanen, J Siren, C Bennell, J Woodhams, A Burrell, H Imre, ...
Journal of Criminal Justice 50, 19-28, 2017
Scaling up the effects of inbreeding depression from individuals to metapopulations
E Nonaka, J Sirén, P Somervuo, L Ruokolainen, O Ovaskainen, I Hanski
Journal of Animal Ecology 88 (8), 1202-1214, 2019
Two-phase importance sampling for inference about transmission trees
E Numminen, C Chewapreecha, J Sirén, C Turner, P Turner, SD Bentley, ...
Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20141324, 2014
Transcriptome analysis reveals signature of adaptation to landscape fragmentation
P Somervuo, J Kvist, S Ikonen, P Auvinen, L Paulin, P Koskinen, L Holm, ...
PLoS One 9 (7), e101467, 2014
Assessing the dynamics of natural populations by fitting individual‐based models with approximate Bayesian computation
J Sirén, L Lens, L Cousseau, O Ovaskainen
Methods in Ecology and Evolution 9 (5), 1286-1295, 2018
Effect of spatial connectivity on host resistance in a highly fragmented natural pathosystem
LM Höckerstedt, JP Siren, AL Laine
Journal of evolutionary biology 31 (6), 844-852, 2018
Atlantic salmon (Salmo salar) age at maturity is strongly affected by temperature, population and age-at-maturity genotype
ER Åsheim, PV Debes, A House, P Liljeström, PT Niemelä, JP Siren, ...
Conservation Physiology 11 (1), coac086, 2023
Have I seen you before? Principles of Bayesian predictive classification revisited
J Corander, Y Cui, T Koski, J Sirén
Statistics and computing 23, 59-73, 2013
Variable opportunities for outcrossing result in hotspots of novel genetic variation in a pathogen metapopulation
AL Laine, B Barrès, E Numminen, JP Siren
Elife 8, e47091, 2019
Inference on population histories by approximating infinite alleles diffusion
J Sirén, WP Hanage, J Corander
Molecular biology and evolution 30 (2), 457-468, 2012
Strain diversity and spatial distribution are linked to epidemic dynamics in host populations
JL Eck, B Barrès, S Soubeyrand, J Sirén, E Numminen, AL Laine
The American Naturalist 199 (1), 000-000, 2022
The multivariate Wright–Fisher process with mutation: Moment-based analysis and inference using a hierarchical beta model
A Hobolth, J Siren
Theoretical population biology 108, 36-50, 2016
Structure and stability of genetic variance–covariance matrices: A Bayesian sparse factor analysis of transcriptional variation in the three‐spined stickleback
J Siren, O Ovaskainen, J Merilä
Molecular ecology 26 (19), 5099-5113, 2017
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