Jose Carbonell Caballero
Jose Carbonell Caballero
Serior Researcher at Barcelona Supercomputing Center
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Cited by
Cited by
Qualimap: evaluating next-generation sequencing alignment data
F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ...
Bioinformatics 28 (20), 2678-2679, 2012
MRI denoising using non-local means
JV Manjón, J Carbonell-Caballero, JJ Lull, G García-Martí, ...
Medical image analysis 12 (4), 514-523, 2008
Genomics of the origin and evolution of Citrus
GA Wu, J Terol, V Ibanez, A López-García, E Pérez-Román, C Borredá, ...
Nature 554 (7692), 311, 2018
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ...
Nucleic acids research 38 (suppl 2), W210-W213, 2010
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623, 2015
A phylogenetic analysis of 34 chloroplast genomes elucidates the relationships between wild and domestic species within the genus Citrus
J Carbonell-Caballero, R Alonso, V Ibañez, J Terol, M Talon, J Dopazo
Molecular biology and evolution 32 (8), 2015
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
PG Ferreira, M Muñoz-Aguirre, F Reverter, CPS Godinho, A Sousa, ...
Nature communications 9 (1), 490, 2018
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ...
Nucleic Acids Research 39 (suppl 2), W470-W474, 2011
Babelomics 5.0: functional interpretation for new generations of genomic data
R Alonso, F Salavert, F Garcia-Garcia, J Carbonell-Caballero, M Bleda, ...
Nucleic acids research 43 (W1), W117-W121, 2015
Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia
E Larriba, MDLA Jaime, J Carbonell-Caballero, A Conesa, J Dopazo, ...
Fungal Genetics and Biology 65, 69-80, 2014
Increased amygdala and parahippocampal gyrus activation in schizophrenic patients with auditory hallucinations: an fMRI study using independent component analysis
MJ Escartí, M de la Iglesia-Vayá, L Martí-Bonmatí, M Robles, J Carbonell, ...
Schizophrenia research 117 (1), 31-41, 2010
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
F Al-Shahrour, J Carbonell, P Minguez, S Goetz, A Conesa, J Tárraga, ...
Nucleic acids research 36 (suppl 2), W341-W346, 2008
GEPAS, a web-based tool for microarray data analysis and interpretation
J Tárraga, I Medina, J Carbonell, J Huerta-Cepas, P Minguez, E Alloza, ...
Nucleic acids research 36 (suppl 2), W308-W314, 2008
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies
I Medina, D Montaner, N Bonifaci, MA Pujana, J Carbonell, J Tarraga, ...
Nucleic acids research 37 (suppl 2), W340-W344, 2009
A nonparametric MRI inhomogeneity correction method
JV Manjón, JJ Lull, J Carbonell-Caballero, G García-Martí, ...
Medical image analysis 11 (4), 336-345, 2007
High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes
MR Hidalgo, C Cubuk, A Amadoz, F Salavert, J Carbonell-Caballero, ...
Oncotarget 8 (3), 5160, 2017
Robust MRI brain tissue parameter estimation by multistage outlier rejection
JV Manjon, J Tohka, G García‐Martí, J Carbonell‐Caballero, JJ Lull, ...
Magnetic Resonance in Medicine 59 (4), 866-873, 2008
Arginine citrullination at the C-terminal domain controls RNA polymerase II transcription
P Sharma, A Lioutas, N Fernandez-Fuentes, J Quilez, ...
Molecular cell 73 (1), 84-96. e7, 2019
Fibroblasts activation and abnormal extracellular matrix remodelling as common hallmarks in three cancer‐prone genodermatoses
E Chacón‐Solano, C León, F Díaz, F García‐García, M García, ...
British Journal of Dermatology, 2019
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