David Gilbert

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Rainer BreitlingProfessor of Systems Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Richard OrtonCVR Bioinformatics, MRC-University of Glasgow Centre for Virus ResearchVerified email at glasgow.ac.uk
Aik Choon TanMoffitt Cancer CenterVerified email at Moffitt.org
Walter KolchDirector, Systems Biology Ireland, University College DublinVerified email at ucd.ie
Muffy CalderProfessor of Computing Science, University of GlasgowVerified email at glasgow.ac.uk
Jacques van HeldenAix-Marseille UniversitéVerified email at univ-amu.fr
Robin DonaldsonStanford UniversityVerified email at ecree.com
Jean-Marie JacquetProfesseur, Université de NamurVerified email at unamur.be
Vladislav VyshemirskyLecturer, University of GlasgowVerified email at glasgow.ac.uk
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
Fei Liu (刘飞)South China University of TechnologyVerified email at scut.edu.cn
Desmond HighamProfessor of Mathematics, University of EdinburghVerified email at ed.ac.uk
Inge JonassenProfessor, Head of Department of Informatics, University of BergenVerified email at uib.no
Luboš BrimMasaryk university, Faculty of InformaticsVerified email at fi.muni.cz
Yves DevilleProfessor of Computer Science, Université catholique de Louvain, ICTEAM, EPLVerified email at uclouvain.be
Mojmír KřetínskýMasaryk university, Faculty of InformaticsVerified email at fi.muni.cz
Lorenz WernischBIOS HealthVerified email at mrc-bsu.cam.ac.uk
gilleain torranceResearcherVerified email at ebi.ac.uk
Michael SchroederProfessor in Bioinformatics, TU DresdenVerified email at biotec.tu-dresden.de
Marc BirtwistleClemson UniversityVerified email at clemson.edu

David Gilbert

Professor of Computer Science, Brunel University

Verified email at brunel.ac.uk - Homepage

Bioinformatics Systems Biology Synthetic Biology modelling analysis


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Ensemble machine learning on gene expression data for cancer classification AC Tan, D Gilbert University of Glasgow, 2003	494	2003
Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway RJ Orton, OE Sturm, V Vyshemirsky, M Calder, DR Gilbert, W Kolch Biochemical Journal 392 (2), 249-261, 2005	488	2005
Approaches to the automatic discovery of patterns in biosequences A Brazma, I Jonassen, I Eidhammer, D Gilbert Journal of computational biology 5 (2), 279-305, 1998	467	1998
Petri nets for systems and synthetic biology M Heiner, D Gilbert, R Donaldson International school on formal methods for the design of computer …, 2008	403	2008
Cell fate decisions are specified by the dynamic ERK interactome A Von Kriegsheim, D Baiocchi, M Birtwistle, D Sumpton, W Bienvenut, ... Nature cell biology 11 (12), 1458-1464, 2009	306	2009
GeneRank: using search engine technology for the analysis of microarray experiments JL Morrison, R Breitling, DJ Higham, DR Gilbert BMC bioinformatics 6 (1), 1-14, 2005	304	2005
The mammalian MAPK/ERK pathway exhibits properties of a negative feedback amplifier OE Sturm, R Orton, J Grindlay, M Birtwistle, V Vyshemirsky, D Gilbert, ... Science signaling 3 (153), ra90-ra90, 2010	267	2010
When kinases meet mathematics: the systems biology of MAPK signalling W Kolch, M Calder, D Gilbert FEBS letters 579 (8), 1891-1895, 2005	223	2005
Multi-class protein fold classification using a new ensemble machine learning approach AC Tan, D Gilbert, Y Deville Genome Informatics 14, 206-217, 2003	163	2003
Representing and analysing molecular and cellular function in the computer J Van Helden, A Naim, R Mancuso, M Eldridge, L Wernisch, D Gilbert, ... Biological chemistry 381 (9-10), 921-935, 2000	154	2000
An overview of data models for the analysis of biochemical pathways Y Deville, D Gilbert, J Van Helden, SJ Wodak Briefings in bioinformatics 4 (3), 246-259, 2003	153	2003
From Petri nets to differential equations–an integrative approach for biochemical network analysis D Gilbert, M Heiner International Conference on Application and Theory of Petri Nets, 181-200, 2006	148	2006
Feature selection and the class imbalance problem in predicting protein function from sequence A Al-Shahib, R Breitling, D Gilbert Applied Bioinformatics 4 (3), 195-203, 2005	148	2005
A unifying framework for modelling and analysing biochemical pathways using Petri nets D Gilbert, M Heiner, S Lehrack International Conference on Computational Methods in Systems Biology, 200-216, 2007	139	2007
TOPS: an enhanced database of protein structural topology I Michalopoulos, GM Torrance, DR Gilbert, DR Westhead Nucleic acids research 32 (suppl_1), D251-D254, 2004	123	2004
Motif-based searching in TOPS protein topology databases. D Gilbert, D Westhead, N Nagano, J Thornton Bioinformatics (Oxford, England) 15 (4), 317-326, 1999	120	1999
Computational methodologies for modelling, analysis and simulation of signalling networks D Gilbert, H Fuss, X Gu, R Orton, S Robinson, V Vyshemirsky, MJ Kurth, ... Briefings in Bioinformatics 7 (4), 339-353, 2006	118	2006
A lock-and-key model for protein–protein interactions JL Morrison, R Breitling, DJ Higham, DR Gilbert Bioinformatics 22 (16), 2012-2019, 2006	115	2006
A model checking approach to the parameter estimation of biochemical pathways R Donaldson, D Gilbert International Conference on Computational Methods in Systems Biology, 269-287, 2008	111	2008
Analysis of signalling pathways using continuous time Markov chains M Calder, V Vyshemirsky, D Gilbert, R Orton Transactions on Computational Systems Biology VI, 44-67, 2006	102	2006

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