Combined 3D-QSAR modeling and molecular docking study on indolinone derivatives as inhibitors of 3-phosphoinositide-dependent protein kinase-1 MDM AbdulHameed, A Hamza, J Liu, CG Zhan Journal of chemical information and modeling 48 (9), 1760-1772, 2008 | 107 | 2008 |
Exploring polypharmacology using a ROCS-based target fishing approach MDM AbdulHameed, S Chaudhury, N Singh, H Sun, A Wallqvist, GJ Tawa Journal of chemical information and modeling 52 (2), 492-505, 2012 | 90 | 2012 |
Systems biology approaches for discovering biomarkers for traumatic brain injury JD Feala, MDM AbdulHameed, C Yu, B Dutta, X Yu, K Schmid, J Dave, ... Journal of neurotrauma 30 (13), 1101-1116, 2013 | 82 | 2013 |
Systems level analysis and identification of pathways and networks associated with liver fibrosis MDM AbdulHameed, GJ Tawa, K Kumar, DL Ippolito, JA Lewis, ... PloS one 9 (11), e112193, 2014 | 72 | 2014 |
Data-driven prediction of adverse drug reactions induced by drug-drug interactions R Liu, MDM AbdulHameed, K Kumar, X Yuˆ, A Wallqvist, J Reifman BMC Pharmacology and Toxicology 18, 1-18, 2017 | 50 | 2017 |
Molecular basis of the selectivity of the immunoproteasome catalytic subunit LMP2-specific inhibitor revealed by molecular modeling and dynamics simulations B Lei, MDM Abdul Hameed, A Hamza, M Wehenkel, JL Muzyka, XJ Yao, ... The journal of physical chemistry B 114 (38), 12333-12339, 2010 | 49 | 2010 |
Understanding Microscopic Binding of Human Microsomal Prostaglandin E Synthase-1 (mPGES-1) Trimer with Substrate PGH2 and Cofactor GSH: Insights from … A Hamza, M Tong, MDM AbdulHameed, J Liu, AC Goren, HH Tai, ... The Journal of Physical Chemistry B 114 (16), 5605-5616, 2010 | 49 | 2010 |
QSAR classification model for antibacterial compounds and its use in virtual screening N Singh, S Chaudhury, R Liu, MDM AbdulHameed, G Tawa, A Wallqvist Journal of chemical information and modeling 52 (10), 2559-2569, 2012 | 46 | 2012 |
Gene expression patterns associated with histopathology in toxic liver fibrosis DL Ippolito, MDM AbdulHameed, GJ Tawa, CE Baer, MG Permenter, ... Toxicological Sciences 149 (1), 67-88, 2016 | 45 | 2016 |
Human microsomal prostaglandin E synthase-1 (mPGES-1) binding with inhibitors and the quantitative structure− activity correlation MDM AbdulHameed, A Hamza, J Liu, X Huang, CG Zhan Journal of chemical information and modeling 48 (1), 179-185, 2008 | 40 | 2008 |
Characterization of chemically induced liver injuries using gene co-expression modules GJ Tawa, MDM AbdulHameed, X Yu, K Kumar, DL Ippolito, JA Lewis, ... PloS one 9 (9), e107230, 2014 | 38 | 2014 |
Modeling in vitro inhibition of butyrylcholinesterase using molecular docking, multi-linear regression and artificial neural network approaches F Zheng, M Zhan, X Huang, MDMA Hameed, CG Zhan Bioorganic & medicinal chemistry 22 (1), 538-549, 2014 | 37 | 2014 |
Microscopic modes and free energies of 3-phosphoinositide-dependent kinase-1 (PDK1) binding with celecoxib and other inhibitors MDM AbdulHameed, A Hamza, CG Zhan The Journal of Physical Chemistry B 110 (51), 26365-26374, 2006 | 37 | 2006 |
Synthesis and evaluation of Strychnos alkaloids as MDR reversal agents for cancer cell eradication S Munagala, G Sirasani, P Kokkonda, M Phadke, N Krynetskaia, P Lu, ... Bioorganic & Medicinal Chemistry 22 (3), 1148-1155, 2014 | 35 | 2014 |
Systems toxicology of chemically induced liver and kidney injuries: histopathology‐associated gene co‐expression modules JA Te, MDM AbdulHameed, A Wallqvist Journal of Applied Toxicology 36 (9), 1137-1149, 2016 | 30 | 2016 |
Understanding microscopic binding of human microsomal prostaglandin E synthase-1 with substrates and inhibitors by molecular modeling and dynamics simulation A Hamza, MDM AbdulHameed, CG Zhan The Journal of Physical Chemistry B 112 (24), 7320-7329, 2008 | 28 | 2008 |
Predicting rat and human pregnane X receptor activators using Bayesian classification models MDM AbdulHameed, DL Ippolito, A Wallqvist Chemical Research in Toxicology 29 (10), 1729-1740, 2016 | 26 | 2016 |
3-substituted indole inhibitors against Francisella tularensis FabI identified by structure-based virtual screening X Hu, JR Compton, MDM AbdulHameed, CL Marchand, KL Robertson, ... Journal of medicinal chemistry 56 (13), 5275-5287, 2013 | 26 | 2013 |
Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction S Chaudhury, MDM Abdulhameed, N Singh, GJ Tawa, PM D’haeseleer, ... PLoS One 8 (5), e63369, 2013 | 26 | 2013 |
Mining kidney toxicogenomic data by using gene co-expression modules MDM AbdulHameed, DL Ippolito, JD Stallings, A Wallqvist BMC genomics 17, 1-17, 2016 | 25 | 2016 |