Adrian Altenhoff

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Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerified email at unil.ch
Clément - Marie TrainPhD student, UNIL LausannneVerified email at unil.ch
David DylusSenior Scientist, Systems Biology, RocheVerified email at roche.com
Gaston H. GonnetProfessor Emeritus of Computer Science at the ETH ZurichVerified email at inf.ethz.ch
Henning RedestigData scientist, Genencor InternationalVerified email at iff.com
Tarcisio Mendes De FariasCo-Team Lead, Knowledge Representation Unit at SIB Swiss Institute of BioinformaticsVerified email at sib.swiss
Daniel A. DalquenResearch Associate, University College LondonVerified email at ucl.ac.uk
Ivana PiližotaEMBL-EBIVerified email at ebi.ac.uk
Romain StuderBenevolentAIVerified email at benevolent.ai
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
Adrian SchneiderPost-doc, Utrecht UniversityVerified email at uu.nl
Karina ZileSamudra.worldVerified email at samudra.world
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)Verified email at bsc.es
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerified email at embl.de
Manuel GilCo-director Centre of Bioinformatics, ZHAWVerified email at zhaw.ch
Christoph FreiSenior Scientist, Federal Office of Meteorology and Climatology MeteoSwissVerified email at meteoswiss.ch
huw daviesInstitute for Atmospheric & Climate Science, ETHVerified email at env.ethz.ch
Olivia MartiusOeschger Centre for Climate Change Research, Institute of Geography, Mobiliar Lab, University ofVerified email at giub.unibe.ch
Petros KoumoutsakosHarvard UniversityVerified email at seas.harvard.edu

Adrian Altenhoff

ETH Zurich

Verified email at inf.ethz.ch - Homepage

Bioinformatics Phylogenetics Molecular Evolution Comparative Genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009	474	2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016	438	2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019	401	2019
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012	267	2012
OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010	253	2010
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018	246	2018
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015	244	2015
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	235	2016
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic acids research 49 (D1), D373-D379, 2021	194	2021
Inferring hierarchical orthologous groups from orthologous gene pairs AM Altenhoff, M Gil, GH Gonnet, C Dessimoz PloS one 8 (1), e53786, 2013	178	2013
Inferring orthology and paralogy AM Altenhoff, C Dessimoz Evolutionary Genomics: Statistical and Computational Methods, Volume 1, 259-279, 2012	147	2012
OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome research 29 (7), 1152-1163, 2019	142	2019
A gridded hourly precipitation dataset for Switzerland using rain-gauge analysis and radar-based disaggregation M Wüest, C Frei, A Altenhoff, M Hagen, M Litschi International Journal of Climatology 30, 1764-1775, 2010	130	2010
Quality of computationally inferred gene ontology annotations N Škunca, A Altenhoff, C Dessimoz PLoS computational biology 8 (5), e1002533, 2012	127	2012
Linkage of atmospheric blocks and synoptic-scale Rossby waves: A climatological analysis AM Altenhoff, O Martius, M Croci-Maspoli, C Schwierz, HC Davies Tellus A: Dynamic Meteorology and Oceanography 60 (5), 1053-1063, 2008	117	2008
Inferring orthology and paralogy AM Altenhoff, NM Glover, C Dessimoz Evolutionary genomics: statistical and computational methods, 149-175, 2019	96	2019
Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz Bioinformatics 33 (14), i75-i82, 2017	94	2017
Distinct evolutionary strategies in the GGPPS family from plants D Coman, A Altenhoff, S Zoller, W Gruissem, E Vranová Frontiers in Plant Science 5, 230, 2014	60	2014
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016	51	2016
A stochastic boundary forcing for dissipative particle dynamics AM Altenhoff, JH Walther, P Koumoutsakos Journal of Computational Physics 225 (1), 1125-1136, 2007	50	2007

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