| Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009 | 444 | 2009 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 387 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 291 | 2019 |
| OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010 | 243 | 2010 |
| Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012 | 239 | 2012 |
| The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015 | 234 | 2015 |
| The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018 | 230 | 2018 |
| Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016 | 217 | 2016 |
| Inferring hierarchical orthologous groups from orthologous gene pairs AM Altenhoff, M Gil, GH Gonnet, C Dessimoz PloS one 8 (1), e53786, 2013 | 164 | 2013 |
| Inferring orthology and paralogy AM Altenhoff, C Dessimoz Evolutionary Genomics: Statistical and Computational Methods, Volume 1, 259-279, 2012 | 135 | 2012 |
| A gridded hourly precipitation dataset for Switzerland using rain‐gauge analysis and radar‐based disaggregation M Wüest, C Frei, A Altenhoff, M Hagen, M Litschi, C Schär International Journal of Climatology 30 (12), 1764-1775, 2010 | 126 | 2010 |
| Quality of computationally inferred gene ontology annotations N Škunca, A Altenhoff, C Dessimoz PLoS computational biology 8 (5), e1002533, 2012 | 124 | 2012 |
| OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more AM Altenhoff, CM Train, KJ Gilbert, I Mediratta, T Mendes de Farias, D Moi, ... Nucleic acids research 49 (D1), D373-D379, 2021 | 121 | 2021 |
| Linkage of atmospheric blocks and synoptic-scale Rossby waves: A climatological analysis AM Altenhoff, O Martius, M Croci-Maspoli, C Schwierz, HC Davies Tellus A: Dynamic Meteorology and Oceanography 60 (5), 1053-1063, 2008 | 110 | 2008 |
| OMA standalone: orthology inference among public and custom genomes and transcriptomes AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ... Genome research 29 (7), 1152-1163, 2019 | 99 | 2019 |
| Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference CM Train, NM Glover, GH Gonnet, AM Altenhoff, C Dessimoz Bioinformatics 33 (14), i75-i82, 2017 | 77 | 2017 |
| Inferring orthology and paralogy AM Altenhoff, NM Glover, C Dessimoz Evolutionary genomics: statistical and computational methods, 149-175, 2019 | 74 | 2019 |
| A stochastic boundary forcing for dissipative particle dynamics AM Altenhoff, JH Walther, P Koumoutsakos Journal of Computational Physics 225 (1), 1125-1136, 2007 | 50 | 2007 |
| Distinct evolutionary strategies in the GGPPS family from plants D Coman, A Altenhoff, S Zoller, W Gruissem, E Vranová Frontiers in Plant Science 5, 230, 2014 | 49 | 2014 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 48 | 2016 |
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
