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Shahin Mohammadi
Shahin Mohammadi
Broad Institute
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 570 (7761), 332-337, 2019
16112019
Kavosh: a new algorithm for finding network motifs
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...
BMC bioinformatics 10 (1), 1-12, 2009
2862009
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration
M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ...
Nature communications 10 (1), 4902, 2019
2072019
Cell type-specific transcriptomics reveals that mutant huntingtin leads to mitochondrial RNA release and neuronal innate immune activation
H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ...
Neuron 107 (5), 891-908. e8, 2020
1412020
Network similarity decomposition (nsd): A fast and scalable approach to network alignment
G Kollias, S Mohammadi, A Grama
IEEE Transactions on Knowledge and Data Engineering 24 (12), 2232-2243, 2011
1072011
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways
S Mohammadi, B Saberidokht, S Subramaniam, A Grama
BMC systems biology 9, 1-22, 2015
842015
A Critical Survey of Deconvolution Methods for Separating Cell-Types in Complex Tissues
S Mohammadi, N Zuckerman, A Goldsmith, A Grama
Proceedings of IEEE, Special Issue on Principles and Applications of Science …, 2016
782016
Reconstruction of cell-type-specific interactomes at single-cell resolution
S Mohammadi, J Davila-Velderrain, M Kellis
Cell systems 9 (6), 559-568. e4, 2019
572019
Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic link and transcriptional resilience associated cellular state
B Ruzicka, S Mohammadi, J Davila-Velderrain, S Subburaju, R Tso, ...
Biological psychiatry 89 (9), S106, 2021
552021
Low rank spectral network alignment
H Nassar, N Veldt, S Mohammadi, A Grama, DF Gleich
Proceedings of the 2018 World Wide Web Conference, 619-628, 2018
512018
A geometric approach to characterize the functional identity of single cells
S Mohammadi, V Ravindra, DF Gleich, A Grama
Nature communications 9 (1), 1516, 2018
502018
Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment
S Mohammadi, DF Gleich, TG Kolda, A Grama
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1, 2016
482016
A multiresolution framework to characterize single-cell state landscapes
S Mohammadi, J Davila-Velderrain, M Kellis
Nature communications 11 (1), 5399, 2020
382020
Spatial estimation of soil erosion in Iran using RUSLE model
S Mohammadi, H Karimzadeh, M Alizadeh
Iranian journal of Ecohydrology 5 (2), 551-569, 2018
352018
Author Correction: Single-cell transcriptomic analysis of Alzheimer’s disease
H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ...
Nature 571 (7763), E1-E1, 2019
342019
A fast approach to global alignment of protein-protein interaction networks
G Kollias, M Sathe, S Mohammadi, A Grama
BMC research notes 6 (1), 1-11, 2013
272013
Single-cell profiling of the human primary motor cortex in ALS and FTLD
SS Pineda, H Lee, BE Fitzwalter, S Mohammadi, LJ Pregent, ...
bioRxiv, 2021.07. 07.451374, 2021
252021
Context-specific recommendation system for predicting similar pubmed articles
S Mohammadi, S Kylasa, G Kollias, A Grama
2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW …, 2016
182016
Single-cell deconvolution of 3,000 post-mortem brain samples for eQTL and GWAS dissection in mental disorders
Y Park, L He, J Davila-Velderrain, L Hou, S Mohammadi, H Mathys, ...
BioRxiv, 2021.01. 21.426000, 2021
132021
A convex optimization approach for identification of human tissue-specific interactomes
S Mohammadi, A Grama
Bioinformatics 32 (12), 2016
132016
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Articles 1–20