Mark Musen

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Natasha NoyGoogleVerified email at google.com
Samson TuSenior Research Engineer Emeritus, Biomedical Informatics, Stanford UniversityVerified email at stanford.edu
Nigam ShahProfessor of Medicine, and Biomedical Data Science, Stanford UniversityVerified email at stanford.edu
Tania TudoracheStanford UniversityVerified email at stanford.edu
Martin J O'ConnorStanford UniversityVerified email at stanford.edu
Csongor NyulasStanford UniversityVerified email at stanford.edu
Yuval ShaharProfessor of software and information systems engineering, Ben Gurion UniversityVerified email at bgu.ac.il
John H GennariBiomedical & Health Informatics, University of WashingtonVerified email at uw.edu
Clement JonquetSenior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)Verified email at lirmm.fr
Monica CrubezyDirector, LITS Research Solutions & Software Engineering, Emory UniversityVerified email at emory.edu
Amar K. DasVice President of Real World Evidence, Guardant HealthVerified email at guardanthealth.com
Edward H ShortliffeChair Emeritus of Biomedical Informatics (Columbia), Adjunct Professor (Arizona State and Cornell)Verified email at shortliffe.net
Lawrence FaganStanford UniversityVerified email at stanford.edu
David L BuckeridgeMcGill UniversityVerified email at mcgill.ca
mary k goldsteinprofessor of medicine, stanford universityVerified email at stanford.edu
Trish WhetzelEMBL-EBIVerified email at ebi.ac.uk
Margaret-Anne StoreyProfessor of Computer Science, University of VictoriaVerified email at uvic.ca
Ravi D ShankarResearch Scientist, Stanford UniversityVerified email at stanford.edu
John GraybealTechnical Program Manager, Stanford UniversityVerified email at stanford.edu
Holger KnublauchVP Product Development, TopQuadrant Inc.Verified email at knublauch.com

Mark Musen

Professor of Biomedical Informatics Research, Stanford University

Verified email at stanford.edu

open science Intelligent systems applied ontology ontologies biomedical informatics


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The evolution of Protégé: an environment for knowledge-based systems development JH Gennari, MA Musen, RW Fergerson, WE Grosso, M Crubézy, ... International Journal of Human-computer studies 58 (1), 89-123, 2003	1700	2003
Algorithm and tool for automated ontology merging and alignment NF Noy, MA Musen Proceedings of the 17th National Conference on Artificial Intelligence (AAAI …, 2000	1670	2000
Creating semantic web contents with protege-2000 NF Noy, M Sintek, S Decker, M Crubézy, RW Fergerson, MA Musen IEEE intelligent systems 16 (2), 60-71, 2001	1574	2001
The Protégé OWL plugin: An open development environment for semantic web applications H Knublauch, RW Fergerson, NF Noy, MA Musen International semantic web conference, 229-243, 2004	1418	2004
The protégé project: a look back and a look forward MA Musen AI matters 1 (4), 4-12, 2015	1277	2015
Network analysis of intrinsic functional brain connectivity in Alzheimer's disease K Supekar, V Menon, D Rubin, M Musen, MD Greicius PLoS computational biology 4 (6), e1000100, 2008	1256	2008
The knowledge model of Protege-2000: Combining interoperability and flexibility NF Noy, RW Fergerson, MA Musen International conference on knowledge engineering and knowledge management …, 2000	1187	2000
Handbook of Medical Informatisc J Bemmel, MA Musen Springer Verlag/Bohn Stafleu Van Loghum, 1997	1118	1997
The PROMPT suite: interactive tools for ontology merging and mapping NF Noy, MA Musen International journal of human-computer studies 59 (6), 983-1024, 2003	1096	2003
BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl_2), W170-W173, 2009	1029	2009
Development of large-scale functional brain networks in children K Supekar, M Musen, V Menon PLoS biology 7 (7), e1000157, 2009	878	2009
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications PL Whetzel, NF Noy, NH Shah, PR Alexander, C Nyulas, T Tudorache, ... Nucleic acids research 39 (suppl_2), W541-W545, 2011	802	2011
Clinical decision-support systems MA Musen, B Middleton, RA Greenes Biomedical informatics, 795-840, 2021	770	2021
Anchor-PROMPT: Using non-local context for semantic matching NF Noy, MA Musen Ois@ ijcai, 2001	679	2001
Dimensions of knowledge sharing and reuse MA Musen Computers and biomedical research 25 (5), 435-467, 1992	562	1992
EON: A component-based approach to automation of protocol-directed therapy MA Musen, SW Tu, AK Das, Y Shahar Journal of the American Medical Informatics Association 3 (6), 367-388, 1996	507	1996
Knowledge modeling at the millennium (the design and evolution of Protégé-2000) WE Grosso, H Eriksson, RW Fergerson, JH Gennari, SW Tu, MA Musen	427	1999
Breast cancer on the world wide web: cross sectional survey of quality of information and popularity of websites F Meric, EV Bernstam, NQ Mirza, KK Hunt, FC Ames, MI Ross, HM Kuerer, ... Bmj 324 (7337), 577-581, 2002	423	2002
Supporting rule system interoperability on the semantic web with SWRL M O’connor, H Knublauch, S Tu, B Grosof, M Dean, W Grosso, M Musen International semantic web conference, 974-986, 2005	399	2005
Knowledge-based temporal abstraction in clinical domains Y Shahar, MA Musen Artificial intelligence in medicine 8 (3), 267-298, 1996	393	1996

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