Sampo Pyysalo - Google Scholar Citations

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Junichi TsujiiArtificial Intelligence Research Center, AISTVerified email at aist.go.jp
Tomoko OHTAtextimiVerified email at textimi.com
Filip GinterUniversity of TurkuVerified email at cs.utu.fi
Tapio SalakoskiProfessor of Computer Science, University of TurkuVerified email at utu.fi
Sophia AnaniadouProfessor of Computer Science, University of Manchester, Computer Science, National Centre for TextVerified email at manchester.ac.uk
Jin-Dong KimAssociate Professor of Database Center for Life ScienceVerified email at dbcls.rois.ac.jp
Jari BjörnePost-doctoral researcher, University of Turku, FinlandVerified email at utu.fi
Pontus StenetorpLecturer, University College LondonVerified email at is.s.u-tokyo.ac.jp
Tapio PahikkalaAssociate Professor, University of turku, FinlandVerified email at utu.fi
Jouni JärvinenAdjunct professor, Department of Mathematics and Statistics, University of Turku, FinlandVerified email at utu.fi
Anna KorhonenProfessor, Computer Science and Linguistics, University of CambridgeVerified email at cam.ac.uk
Makoto MiwaAssociate Professor, Toyota Technological InstituteVerified email at toyota-ti.ac.jp
Yoshinobu KanoFaculty of Informatics, Shizuoka UniversityVerified email at inf.shizuoka.ac.jp
Antti AirolaAssistant Professor, University of TurkuVerified email at utu.fi
Billy ChiuPhD student at University of CambridgeVerified email at cam.ac.uk
Gamal CrichtonUniversity of CambridgeVerified email at cam.ac.uk
Rafal RakUniversity of ManchesterVerified email at manchester.ac.uk
Jan HajicProfessor of Computational Linguistics, Charles University, Prague, Czech RepublicVerified email at ufal.mff.cuni.cz
Joakim NivreProfessor of Computational Linguistics, Uppsala UniversityVerified email at lingfil.uu.se
Slav PetrovPrincipal Scientist / Research Director at GoogleVerified email at petrovi.de

Sampo Pyysalo

University of Turku

Verified email at utu.fi


Title	Cited by	Year
BRAT: a web-based tool for NLP-assisted text annotation P Stenetorp, S Pyysalo, G Topić, T Ohta, S Ananiadou, J Tsujii Proceedings of the Demonstrations at the 13th Conference of the European …, 2012	650	2012
Overview of BioNLP’09 shared task on event extraction JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii Proceedings of the BioNLP 2009 workshop companion volume for shared task, 1-9, 2009	627	2009
Universal dependencies v1: A multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ... Proceedings of the Tenth International Conference on Language Resources and …, 2016	558	2016
BioInfer: a corpus for information extraction in the biomedical domain S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ... BMC bioinformatics 8 (1), 50, 2007	430	2007
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski BMC bioinformatics 9 (S11), S2, 2008	295	2008
Distributional semantics resources for biomedical text processing S Pyysalo, F Ginter, H Moen, T Salakoski, S Ananiadou Languages in Biology and Medicine, 2013	267*	2013
Comparative analysis of five protein-protein interaction corpora S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski BMC bioinformatics 9 (S3), S6, 2008	228	2008
Event extraction for systems biology by text mining the literature S Ananiadou, S Pyysalo, J Tsujii, DB Kell Trends in biotechnology 28 (7), 381-390, 2010	224	2010
How to train good word embeddings for biomedical NLP B Chiu, G Crichton, A Korhonen, S Pyysalo Proceedings of the 15th workshop on biomedical natural language processing …, 2016	166	2016
Overview of BioNLP shared task 2013 C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013	159	2013
CoNLL 2018 shared task: Multilingual parsing from raw text to universal dependencies D Zeman, J Hajic, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ... Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018	139	2018
Complex event extraction at PubMed scale J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski Bioinformatics 26 (12), i382-i390, 2010	126	2010
A graph kernel for protein-protein interaction extraction A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski Proceedings of the workshop on current trends in biomedical natural language …, 2008	105	2008
Attending to characters in neural sequence labeling models M Rei, GKO Crichton, S Pyysalo arXiv preprint arXiv:1611.04361, 2016	98	2016
Large-scale event extraction from literature with multi-level gene normalization S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ... PloS one 8 (4), 2013	95	2013
Universal Dependencies 2.1 J Nivre, Ž Agić, L Ahrenberg, L Antonsen, MJ Aranzabe, M Asahara, ...	94	2017
Event extraction across multiple levels of biological organization S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii, S Ananiadou Bioinformatics 28 (18), i575-i581, 2012	85	2012
Intrinsic evaluation of word vectors fails to predict extrinsic performance B Chiu, A Korhonen, S Pyysalo Proceedings of the 1st workshop on evaluating vector-space representations …, 2016	66	2016
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao, C Wang, B Sobral, J Tsujii, ... BMC bioinformatics 13 (S11), S2, 2012	58	2012
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches S Pyysalo, T Salakoski, S Aubin, A Nazarenko BMC bioinformatics 7 (S3), S2, 2006	56	2006

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