Sampo Pyysalo
Sampo Pyysalo
Verified email at utu.fi
TitleCited byYear
Overview of BioNLP'09 shared task on event extraction
JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii
Proceedings of the Workshop on Current Trends in Biomedical Natural Language …, 2009
6232009
BRAT: a web-based tool for NLP-assisted text annotation
P Stenetorp, S Pyysalo, G Topić, T Ohta, S Ananiadou, J Tsujii
Proceedings of the Demonstrations at the 13th Conference of the European …, 2012
6162012
Universal dependencies v1: A multilingual treebank collection
J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ...
Proceedings of the Tenth International Conference on Language Resources and …, 2016
5152016
BioInfer: a corpus for information extraction in the biomedical domain
S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ...
BMC bioinformatics 8 (1), 50, 2007
4282007
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
BMC bioinformatics 9 (11), S2, 2008
2942008
Comparative analysis of five protein-protein interaction corpora
S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski
BMC bioinformatics 9 (3), S6, 2008
2312008
Distributional semantics resources for biomedical text processing
S Pyysalo, F Ginter, H Moen, T Salakoski, S Ananiadou
Languages in Biology and Medicine, 2013
229*2013
Event extraction for systems biology by text mining the literature
S Ananiadou, S Pyysalo, J Tsujii, DB Kell
Trends in biotechnology 28 (7), 381-390, 2010
2252010
Overview of BioNLP shared task 2013
C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum
Proceedings of the BioNLP Shared Task 2013 Workshop, 1-7, 2013
1542013
How to train good word embeddings for biomedical NLP
B Chiu, G Crichton, A Korhonen, S Pyysalo
Proceedings of the 15th workshop on biomedical natural language processing …, 2016
1512016
Complex event extraction at PubMed scale
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Bioinformatics 26 (12), i382-i390, 2010
1252010
CoNLL 2018 shared task: multilingual parsing from raw text to universal dependencies
D Zeman, J Hajič, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ...
Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw …, 2018
1222018
Universal Dependencies 2.1
J Nivre, Ž Agić, L Ahrenberg, L Antonsen, MJ Aranzabe, M Asahara, ...
1032017
A graph kernel for protein-protein interaction extraction
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
Proceedings of the workshop on current trends in biomedical natural language …, 2008
1032008
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
992013
Attending to characters in neural sequence labeling models
M Rei, GKO Crichton, S Pyysalo
arXiv preprint arXiv:1611.04361, 2016
882016
Event extraction across multiple levels of biological organization
S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii, S Ananiadou
Bioinformatics 28 (18), i575-i581, 2012
792012
Intrinsic evaluation of word vectors fails to predict extrinsic performance
B Chiu, A Korhonen, S Pyysalo
Proceedings of the 1st workshop on evaluating vector-space representations …, 2016
652016
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao, C Wang, B Sobral, J Tsujii, ...
BMC bioinformatics 13 (11), S2, 2012
592012
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches
S Pyysalo, T Salakoski, S Aubin, A Nazarenko
BMC bioinformatics 7 (3), S2, 2006
562006
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Articles 1–20