Delasa Aghamirzaie
Delasa Aghamirzaie
Senior Bioinformatics Scientist at illumina
Vahvistettu sähköpostiosoite verkkotunnuksessa
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ...
Science 361 (6409), 1380-1385, 2018
A single-cell atlas of in vivo mammalian chromatin accessibility
DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ...
Cell 174 (5), 1309-1324. e18, 2018
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ...
Molecular cell 71 (5), 858-871. e8, 2018
The cis-regulatory dynamics of embryonic development at single-cell resolution
DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ...
Nature 555 (7697), 538-542, 2018
Metabolic and transcriptional reprogramming in developing soybean (Glycine max) embryos
E Collakova, D Aghamirzaie, Y Fang, C Klumas, F Tabataba, ...
Metabolites 3 (2), 347-372, 2013
Potential targets of VIVIPAROUS1/ABI3‐LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos
A Schneider, D Aghamirzaie, H Elmarakeby, AN Poudel, AJ Koo, ...
The Plant Journal 85 (2), 305-319, 2016
A machine learning approach to predict gene regulatory networks in seed development in Arabidopsis
Y Ni, D Aghamirzaie, H Elmarakeby, E Collakova, S Li, R Grene, ...
Frontiers in plant science 7, 222812, 2016
Changes in RNA splicing in developing soybean (Glycine max) embryos
D Aghamirzaie, M Nabiyouni, Y Fang, C Klumas, LS Heath, R Grene, ...
Biology 2 (4), 1311-1337, 2013
Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.
D Aghamirzaie, D Batra, LS Heath, A Schneider, R Grene, E Collakova
BMC Genomics, 2015
Expresso: a database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data
D Aghamirzaie, KR Velmurugan, S Wu, D Altarawy, LS Heath, R Grene
F1000Research 6, 2017
CoSpliceNet: a framework for co-splicing network inference from transcriptomics data
D Aghamirzaie, E Collakova, S Li, R Grene
BMC Genomics, 2016
A highly parallel multi-class pattern classification on gpu
M Nabiyouni, D Aghamirzaie
2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2012
Reduction of process variation effect on FPGAs using multiple configurations
D Aghamirzaie, SA Razavi, MS Zamani, M Nabiyouni
2010 18th IEEE/IFIP International Conference on VLSI and System-on-Chip, 85-90, 2010
Induction of GLUTAMINE DUMPER1 reveals a link between amino acid export, abscisic acid, and immune responses
S Yu, D Aghamirzaie, K Harich, E Collakova, R Grene, G Pilot
bioRxiv, 2020.09. 23.310615, 2020
Reviewers for Bioinformatics and Biology Insights: 2018
AK Shasany, A Ten Have, A Onan, S Beier, D Cheek, D Aghamirzaie, ...
Bioinformatics and Biology Insights 13, 1, 2019
Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data
F1000 6 (372), 2017
Isoform-Specific Expression During Embryo Development in Arabidopsis and Soybean
D Aghamirzaie
Virginia Tech, 2016
Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos
R Grene, LS Heath, E Myers, F Tabataba, A Kakumanu, C Klumas, ...
Changes in RNA Splicing in Soybean Seed Embryos
D Aghamirzaie, L Heath, R Grene, E Collakova
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Artikkelit 1–19