Yli-Harja
Yli-Harja
Signaalinkäsittely
Verified email at cs.tut.fi
Title
Cited by
Cited by
Year
Analysis of the properties of median and weighted median filters using threshold logic and stack filter representation
O Yli-Harja, J Astola, Y Neuvo
IEEE Transactions on Signal Processing 39 (2), 395-410, 1991
4101991
On learning gene regulatory networks under the Boolean network model
H Lähdesmäki, I Shmulevich, O Yli-Harja
Machine learning 52 (1-2), 147-167, 2003
2762003
Software for quantification of labeled bacteria from digital microscope images by automated image analysis
J Selinummi, J Seppälä, O Yli-Harja, JA Puhakka
Biotechniques 39 (6), 859-863, 2005
2602005
High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity
E Närvä, R Autio, N Rahkonen, L Kong, N Harrison, D Kitsberg, ...
Nature biotechnology 28 (4), 371-377, 2010
2432010
Gene expression dynamics in the macrophage exhibit criticality
M Nykter, ND Price, M Aldana, SA Ramsey, SA Kauffman, LE Hood, ...
Proceedings of the National Academy of Sciences 105 (6), 1897-1900, 2008
2182008
Computational framework for simulating fluorescence microscope images with cell populations
A Lehmussola, P Ruusuvuori, J Selinummi, H Huttunen, O Yli-Harja
IEEE transactions on medical imaging 26 (7), 1010-1016, 2007
1812007
Robust quantification of in vitro angiogenesis through image analysis
A Niemisto, V Dunmire, O Yli-Harja, W Zhang, I Shmulevich
IEEE transactions on medical imaging 24 (4), 549-553, 2005
1782005
The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma
BC Parker, MJ Annala, DE Cogdell, KJ Granberg, Y Sun, P Ji, X Li, ...
The Journal of clinical investigation 123 (2), 2013
1752013
Robust detection of periodic time series measured from biological systems
M Ahdesmäki, H Lähdesmäki, R Pearson, H Huttunen, O Yli-Harja
BMC bioinformatics 6 (1), 117, 2005
1452005
CGH-Plotter: MATLAB toolbox for CGH-data analysis
R Autio, S Hautaniemi, P Kauraniemi, O Yli-Harja, J Astola, M Wolf, ...
Bioinformatics 19 (13), 1714-1715, 2003
1352003
Perturbation avalanches and criticality in gene regulatory networks
P Rämö, J Kesseli, O Yli-Harja
Journal of Theoretical Biology 242 (1), 164-170, 2006
1312006
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks
H Lähdesmäki, S Hautaniemi, I Shmulevich, O Yli-Harja
Signal processing 86 (4), 814-834, 2006
1222006
Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells
T Jaatinen, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, ...
Stem cells 24 (3), 631-641, 2006
1162006
Critical networks exhibit maximal information diversity in structure-dynamics relationships
M Nykter, ND Price, A Larjo, T Aho, SA Kauffman, O Yli-Harja, ...
Physical review letters 100 (5), 058702, 2008
1002008
A review of connectivity map and computational approaches in pharmacogenomics
A Musa, LS Ghoraie, SD Zhang, G Glazko, O Yli-Harja, M Dehmer, ...
Briefings in bioinformatics 19 (3), 506-523, 2018
952018
Differential gene expression in adipose stem cells cultured in allogeneic human serum versus fetal bovine serum
B Lindroos, KL Aho, H Kuokkanen, S Räty, H Huhtala, R Lemponen, ...
Tissue Engineering Part A 16 (7), 2281-2294, 2010
922010
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
P Ruusuvuori, T Äijö, S Chowdhury, C Garmendia-Torres, J Selinummi, ...
BMC bioinformatics 11 (1), 1-17, 2010
842010
Simulation of microarray data with realistic characteristics
M Nykter, T Aho, M Ahdesmäki, P Ruusuvuori, A Lehmussola, O Yli-Harja
BMC bioinformatics 7 (1), 349, 2006
842006
In silico microdissection of microarray data from heterogeneous cell populations
H Lähdesmäki, V Dunmire, O Yli-Harja, W Zhang
BMC bioinformatics 6 (1), 54, 2005
792005
Perceptual issues in music pattern recognition: Complexity of rhythm and key finding
I Shmulevich, O Yli-Harja, E Coyle, DJ Povel, K Lemström
Computers and the Humanities 35 (1), 23-35, 2001
792001
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Articles 1–20