Amarda Shehu
Title
Cited by
Cited by
Year
Principles and overview of sampling methods for modeling macromolecular structure and dynamics
T Maximova, R Moffatt, B Ma, R Nussinov, A Shehu
PLoS computational biology 12 (4), e1004619, 2016
1652016
Deep learning improves antimicrobial peptide recognition
D Veltri, U Kamath, A Shehu
Bioinformatics 34 (16), 2740-2747, 2018
1132018
Modeling protein conformational ensembles: from missing loops to equilibrium fluctuations
A Shehu, C Clementi, LE Kavraki
Proteins: Structure, Function, and Bioinformatics 65 (1), 164-179, 2006
902006
Multiscale characterization of protein conformational ensembles
A Shehu, LE Kavraki, C Clementi
Proteins: Structure, Function, and Bioinformatics 76 (4), 837-851, 2009
762009
Are nicotinic acetylcholine receptors coupled to G proteins?
N Kabbani, JC Nordman, BA Corgiat, DP Veltri, A Shehu, VA Seymour, ...
Bioessays 35 (12), 1025-1034, 2013
732013
Guiding the search for native-like protein conformations with an ab-initio tree-based exploration
A Shehu, B Olson
The International Journal of Robotics Research 29 (8), 1106-1127, 2010
712010
Menthol binding and inhibition of α7-nicotinic acetylcholine receptors
A Ashoor, JC Nordman, D Veltri, KHS Yang, L Al Kury, Y Shuba, ...
PloS one 8 (7), e67674, 2013
552013
Effective automated feature construction and selection for classification of biological sequences
U Kamath, K De Jong, A Shehu
PloS one 9 (7), e99982, 2014
542014
Multi-objective stochastic search for sampling local minima in the protein energy surface
B Olson, A Shehu
Proceedings of the International Conference on Bioinformatics, Computational†…, 2013
532013
Mapping the conformation space of wildtype and mutant H-Ras with a memetic, cellular, and multiscale evolutionary algorithm
R Clausen, B Ma, R Nussinov, A Shehu
PLoS Comput Biol 11 (9), e1004470, 2015
512015
Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules.
B Olson, I Hashmi, K Molloy, A Shehu
Advances in Artificial Intelligence (16877470), 2012
502012
Probabilistic search and optimization for protein energy landscapes
A Shehu, S Aluru, A Singh
Handbook of Computational Molecular Biology, 2013
492013
Restriction versus guidance in protein structure prediction
JA Hegler, J Lštzer, A Shehu, C Clementi, PG Wolynes
Proceedings of the National Academy of Sciences 106 (36), 15302-15307, 2009
482009
Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface
BS Olson, A Shehu
Proteome Science 10 (1), 1-16, 2012
452012
Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction
K Molloy, S Saleh, A Shehu
IEEE/ACM transactions on computational biology and bioinformatics 10 (5†…, 2013
432013
On the characterization of protein native state ensembles
A Shehu, LE Kavraki, C Clementi
Biophysical Journal 92 (5), 1503-1511, 2007
422007
Off-lattice protein structure prediction with homologous crossover
B Olson, K De Jong, A Shehu
Proceedings of the 15th annual conference on Genetic and evolutionary†…, 2013
412013
An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction
U Kamath, J Compton, R Islamaj-Doğan, KA De Jong, A Shehu
IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (5†…, 2012
412012
Modeling structures and motions of loops in protein molecules
A Shehu, LE Kavraki
Entropy 14 (2), 252-290, 2012
392012
Improving recognition of antimicrobial peptides and target selectivity through machine learning and genetic programming
D Veltri, U Kamath, A Shehu
IEEE/ACM transactions on computational biology and bioinformatics 14 (2†…, 2015
382015
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Articles 1–20