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Geir Kjetil Sandve
Geir Kjetil Sandve
Professor, bioinformatics, University of Oslo
Verified email at ifi.uio.no
Title
Cited by
Cited by
Year
Ten simple rules for reproducible computational research
GK Sandve, A Nekrutenko, J Taylor, E Hovig
PLoS computational biology 9 (10), e1003285, 2013
8072013
Hopfield networks is all you need
H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, T Adler, L Gruber, ...
arXiv preprint arXiv:2008.02217, 2020
4112020
A survey of motif discovery methods in an integrated framework
GK Sandve, F Drabløs
Biology direct 1, 1-16, 2006
2242006
In the loop: promoter–enhancer interactions and bioinformatics
A Mora, GK Sandve, OS Gabrielsen, R Eskeland
Briefings in bioinformatics 17 (6), 980-995, 2016
1672016
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ...
Cell Reports 34 (11), 2021
1462021
Modern hopfield networks and attention for immune repertoire classification
M Widrich, B Schäfl, M Pavlović, H Ramsauer, L Gruber, M Holzleitner, ...
Advances in neural information processing systems 33, 18832-18845, 2020
1092020
The Genomic HyperBrowser: inferential genomics at the sequence level
GK Sandve, S Gundersen, H Rydbeck, IK Glad, L Holden, M Holden, ...
Genome biology 11, 1-12, 2010
1082010
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease
LF Risnes, A Christophersen, S Dahal-Koirala, RS Neumann, GK Sandve, ...
The Journal of clinical investigation 128 (6), 2642-2650, 2018
1062018
Improved benchmarks for computational motif discovery
GK Sandve, O Abul, V Walseng, F Drabløs
BMC bioinformatics 8, 1-13, 2007
982007
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease
AE Handel, GK Sandve, G Disanto, AJ Berlanga-Taylor, G Gallone, ...
BMC medicine 11, 1-11, 2013
932013
A map of direct TF–DNA interactions in the human genome
M Gheorghe, GK Sandve, A Khan, J Chèneby, B Ballester, A Mathelier
Nucleic acids research 47 (4), e21-e21, 2019
852019
In silico proof of principle of machine learning-based antibody design at unconstrained scale
R Akbar, PA Robert, CR Weber, M Widrich, R Frank, M Pavlović, ...
MAbs 14 (1), 2031482, 2022
812022
Assessment of composite motif discovery methods
K Klepper, GK Sandve, O Abul, J Johansen, F Drablos
BMC bioinformatics 9, 1-16, 2008
742008
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
AJ Brown, I Snapkov, R Akbar, M Pavlović, E Miho, GK Sandve, V Greiff
Molecular Systems Design & Engineering 4 (4), 701-736, 2019
652019
Uracil accumulation and mutagenesis dominated by cytosine deamination in CpG dinucleotides in mice lacking UNG and SMUG1
L Alsøe, A Sarno, S Carracedo, D Domanska, F Dingler, L Lirussi, ...
Scientific reports 7 (1), 7199, 2017
642017
immuneSIM: tunable multi-feature simulation of B-and T-cell receptor repertoires for immunoinformatics benchmarking
CR Weber, R Akbar, A Yermanos, M Pavlović, I Snapkov, GK Sandve, ...
Bioinformatics 36 (11), 3594-3596, 2020
632020
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires
M Pavlović, L Scheffer, K Motwani, C Kanduri, R Kompova, N Vazov, ...
Nature Machine Intelligence 3 (11), 936-944, 2021
572021
Vitamin D receptor binding, chromatin states and association with multiple sclerosis
G Disanto, GK Sandve, AJ Berlanga-Taylor, G Ragnedda, JM Morahan, ...
Human molecular genetics 21 (16), 3575-3586, 2012
572012
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy
VAG Ricigliano, AE Handel, GK Sandve, V Annibali, G Ristori, R Mechelli, ...
PLoS One 10 (4), e0119605, 2015
542015
High-throughput single-cell analysis of B cell receptor usage among autoantigen-specific plasma cells in celiac disease
B Roy, RS Neumann, O Snir, R Iversen, GK Sandve, KEA Lundin, ...
The Journal of Immunology 199 (2), 782-791, 2017
502017
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