Liisa Holm

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Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Jong ParkVerified email at genomics.org
Jody ClementsPrincipal Software Engineer, Janelia Farm Research Campus, HHMIVerified email at janelia.hhmi.org
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Petri AuvinenInstitute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Sabine DietmannAssistant Professor of Developmental Biology at Washington University in St Louis Medical SchoolVerified email at wustl.edu
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Cedric NotredamePrincipal Investigator, Centre For Genomic Regulation CRG, BarcelonaVerified email at crg.eu
Esa PitkänenInstitute for Molecular Medicine Finland (FIMM)Verified email at helsinki.fi
Vriend GProfessor Bioinformatics RadboudUMC NijmegenVerified email at radboudumc.nl
Dariusz PlewczynskiProfessor of Bioinformatics, University of WarsawVerified email at cent.uw.edu.pl
Richard HugheyProfessor of Computer Engineering and Biomolecular Engineering, University of California Santa CruzVerified email at soe.ucsc.edu
des higginsUniversity College DublinVerified email at ucd.ie
Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Dan BolserFree ManVerified email at ebi.ac.uk
Kevin KarplusProfessor of Biomolecular Engineering, University of California, Santa CruzVerified email at soe.ucsc.edu
Kimmen SjolanderProfessor of Bioengineering, University of California, BerkeleyVerified email at berkeley.edu
Eugene KooninSenior Investigator, NCBI, NIHVerified email at ncbi.nlm.nih.gov

Liisa Holm

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Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Pfam: the protein families database RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ... Nucleic acids research 42 (D1), D222-D230, 2014	12968*	2014
Protein structure comparison by alignment of distance matrices L Holm, C Sander Journal of molecular biology 233 (1), 123-138, 1993	4752	1993
Dali server: conservation mapping in 3D L Holm, P Rosenstrï¿ ½m Nucleic acids research 38 (suppl_2), W545-W549, 2010	3920	2010
Mapping the protein universe L Holm, C Sander Science 273 (5275), 595-602, 1996	1880	1996
Dali: a network tool for protein structure comparison L Holm, C Sander Trends in biochemical sciences 20 (11), 478-480, 1995	1572	1995
Searching protein structure databases with DaliLite v. 3 L Holm, S Kääriäinen, P Rosenström, A Schenkel Bioinformatics 24 (23), 2780-2781, 2008	1098	2008
DaliLite workbench for protein structure comparison L Holm, J Park Bioinformatics 16 (6), 566-567, 2000	1093	2000
The immunoglobulin fold: structural classification, sequence patterns and common core P Bork, L Holm, C Sander Journal of molecular biology 242 (4), 309-320, 1994	1010	1994
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	920	2013
Touring protein fold space with Dali/FSSP L Holm, C Sander Nucleic acids research 26 (1), 316-319, 1998	861	1998
Dali server update L Holm, LM Laakso Nucleic acids research 44 (W1), W351-W355, 2016	819	2016
An evolutionary treasure: unification of a broad set of amidohydrolases related to urease L Holm, C Sander Proteins: Structure, Function, and Bioinformatics 28 (1), 72-82, 1997	606	1997
Dali/FSSP classification of three-dimensional protein folds L Holm, C Sander Nucleic acids research 25 (1), 231-234, 1997	538	1997
The FSSP database of structurally aligned protein fold families. L Holm, C Sander Nucleic acids research 22 (17), 3600, 1994	455	1994
DALI and the persistence of protein shape L Holm Protein Science 29 (1), 128-140, 2020	439	2020
Advances and pitfalls of protein structural alignment H Hasegawa, L Holm Current opinion in structural biology 19 (3), 341-348, 2009	425	2009
Database algorithm for generating protein backbone and side-chain co-ordinates from a Cα trace: application to model building and detection of co-ordinate errors L Holm, C Sander Journal of molecular biology 218 (1), 183-194, 1991	423	1991
Removing near-neighbour redundancy from large protein sequence collections. L Holm, C Sander Bioinformatics (Oxford, England) 14 (5), 423-429, 1998	411	1998
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016	360	2016
The FSSP database: fold classification based on structure-structure alignment of proteins L Holm, C Sander Nucleic Acids Research 24 (1), 206-209, 1996	346	1996

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