Amjad Alkodsi
Amjad Alkodsi
Unknown affiliation
Verified email at helsinki.fi
Title
Cited by
Cited by
Year
Evolutionary history of metastatic breast cancer reveals minimal seeding from axillary lymph nodes
I Ullah, GM Karthik, A Alkodsi, U Kjällquist, G Stålhammar, J Lövrot, ...
The Journal of clinical investigation 128 (4), 1355-1370, 2018
812018
Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data
A Alkodsi, R Louhimo, S Hautaniemi
Briefings in bioinformatics 16 (2), 242-254, 2015
592015
A functional homologous recombination assay predicts primary chemotherapy response and long-term survival in ovarian cancer patients
M Tumiati, S Hietanen, J Hynninen, E Pietilä, A Färkkilä, K Kaipio, ...
Clinical Cancer Research 24 (18), 4482-4493, 2018
482018
Impact of constitutional TET2 haploinsufficiency on molecular and clinical phenotype in humans
E Kaasinen, O Kuismin, K Rajamäki, H Ristolainen, M Aavikko, J Kondelin, ...
Nature communications 10 (1), 1-17, 2019
392019
Genetic predisposition to uterine leiomyoma is determined by loci for genitourinary development and genome stability
N Välimäki, H Kuisma, A Pasanen, O Heikinheimo, J Sjöberg, R Bützow, ...
Elife 7, e37110, 2018
312018
MicroRNAs regulate key cell survival pathways and mediate chemosensitivity during progression of diffuse large B-cell lymphoma
SK Leivonen, K Icay, K Jäntti, I Siren, C Liu, A Alkodsi, A Cervera, ...
Blood cancer journal 7 (12), 1-11, 2017
212017
Anduril 2: upgraded large-scale data integration framework
A Cervera, V Rantanen, K Ovaska, M Laakso, J Nuñez-Fontarnau, ...
Bioinformatics 35 (19), 3815-3817, 2019
202019
Exome sequencing of primary breast cancers with paired metastatic lesions reveals metastasis-enriched mutations in the A-kinase anchoring protein family (AKAPs)
U Kjällquist, R Erlandsson, NP Tobin, A Alkodsi, I Ullah, G Stålhammar, ...
BMC cancer 18 (1), 1-17, 2018
172018
Deltex-1 mutations predict poor survival in diffuse large B-cell lymphoma
L Meriranta, A Pasanen, R Louhimo, A Cervera, A Alkodsi, M Autio, ...
Haematologica 102 (5), e195, 2017
162017
Distinct subtypes of diffuse large B-cell lymphoma defined by hypermutated genes
A Alkodsi, A Cervera, K Zhang, R Louhimo, L Meriranta, A Pasanen, ...
Leukemia 33 (11), 2662-2672, 2019
112019
Intra-tumor heterogeneity in breast cancer has limited impact on transcriptomic-based molecular profiling
GM Karthik, M Rantalainen, G Stålhammar, J Lövrot, I Ullah, A Alkodsi, ...
BMC cancer 17 (1), 1-11, 2017
92017
Molecular background delineates outcome of double protein expressor diffuse large B-cell lymphoma
L Meriranta, A Pasanen, A Alkodsi, J Haukka, ML Karjalainen-Lindsberg, ...
Blood advances 4 (15), 3742-3753, 2020
82020
Identifying differentially methylated sites in samples with varying tumor purity
A Häkkinen, A Alkodsi, C Facciotto, K Zhang, K Kaipio, S Leppä, ...
Bioinformatics 34 (18), 3078-3085, 2018
42018
Doctoral Thesis
GF He
Improving pig performance and nutrient utilization by manipulating dietary …, 2004
32004
PRISM: Recovering cell type specific expression profiles from composite RNA-seq data
A Häkkinen, K Zhang, A Alkodsi, N Andersson, EP Erkan, J Dai, K Kaipio, ...
bioRxiv, 854505, 2019
22019
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples
A Häkkinen, K Zhang, A Alkodsi, N Andersson, EP Erkan, J Dai, K Kaipio, ...
Bioinformatics, 2021
12021
ESR1, WT1, WNT4, ATM and TERT loci are major contributors to uterine leiomyoma predisposition
N Välimäki, H Kuisma, A Pasanen, O Heikinheimo, J Sjöberg, R Bützow, ...
bioRxiv, 291237, 2018
12018
Abstract P6-01-04: Evolutionary analyses of matched primary and metastatic breast cancer reveal both linear and parallel progression with lack of axillary lymph node involvement
I Ullah, KG Muralidharan, A Alkodsi, U Kjällquist, G Stålhammar, J Lövrot, ...
Cancer Research 77 (4 Supplement), P6-01-04-P6-01-04, 2017
12017
Genome-scale DNA methylation changes delineate uterine leiomyoma subgroups
E Kaasinen, A Alkodsi, M Mehine, HR Heinonen, N Mäkinen, M Aavikko, ...
Cancer Research 76 (14 Supplement), 4435-4435, 2016
12016
HIGH RISK AGGRESSIVE B‐CELL LYMPHOMA ON THE LIQUID BIOPSY
L Meriranta, A Alkodsi, A Pasanen, M Lepistö, YN Blaker, J Jørgensen, ...
Hematological Oncology 39, 2021
2021
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