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Davide Cirillo
Davide Cirillo
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Year
catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
F Agostini, A Zanzoni, P Klus, D Marchese, D Cirillo, GG Tartaglia
Bioinformatics 29 (22), 2928-2930, 2013
2182013
A concentration-dependent liquid phase separation can cause toxicity upon increased protein expression
B Bolognesi, NL Gotor, R Dhar, D Cirillo, M Baldrighi, GG Tartaglia, ...
Cell reports 16 (1), 222-231, 2016
1682016
Big data analytics for personalized medicine
D Cirillo, A Valencia
Current opinion in biotechnology 58, 161-167, 2019
1232019
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare
D Cirillo, S Catuara-Solarz, C Morey, E Guney, L Subirats, S Mellino, ...
NPJ digital medicine 3 (1), 1-11, 2020
1142020
Quantitative predictions of protein interactions with long noncoding RNAs
D Cirillo, M Blanco, A Armaos, A Buness, P Avner, M Guttman, A Cerase, ...
Nature methods 14 (1), 5-6, 2017
992017
Neurodegenerative diseases: quantitative predictions of protein–RNA interactions
D Cirillo, F Agostini, P Klus, D Marchese, S Rodriguez, B Bolognesi, ...
Rna 19 (2), 129-140, 2013
712013
cc SOL omics : a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli
F Agostini, D Cirillo, CM Livi, R Delli Ponti, GG Tartaglia
Bioinformatics 30 (20), 2975-2977, 2014
542014
X-inactivation: quantitative predictions of protein interactions in the Xist network
F Agostini, D Cirillo, B Bolognesi, GG Tartaglia
Nucleic acids research 41 (1), e31-e31, 2013
492013
Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
A Zanzoni, D Marchese, F Agostini, B Bolognesi, D Cirillo, M Botta-Orfila, ...
Nucleic acids research 41 (22), 9987-9998, 2013
462013
Structural repertoire of immunoglobulin λ light chains
A Chailyan, P Marcatili, D Cirillo, A Tramontano
Proteins: Structure, Function, and Bioinformatics 79 (5), 1513-1524, 2011
442011
Constitutive patterns of gene expression regulated by RNA-binding proteins
D Cirillo, D Marchese, F Agostini, CM Livi, T Botta-Orfila, GG Tartaglia
Genome biology 15 (1), 1-13, 2014
422014
Discovering the 3′ UTR-mediated regulation of alpha-synuclein
D Marchese, T Botta-Orfila, D Cirillo, JA Rodriguez, CM Livi, ...
Nucleic Acids Research 45 (22), 12888-12903, 2017
402017
Neurodegeneration and cancer: where the disorder prevails
P Klus, D Cirillo, T Botta Orfila, GG Tartaglia
Scientific reports 5 (1), 1-7, 2015
372015
SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
F Agostini, D Cirillo, RD Ponti, GG Tartaglia
BMC genomics 15 (1), 1-9, 2014
312014
Predictions of protein–RNA interactions
D Cirillo, F Agostini, GG Tartaglia
Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (2), 161-175, 2013
292013
Characterization of Novel Paternal ncRNAs at the Plagl1 Locus, Including Hymai, Predicted to Interact with Regulators of Active Chromatin
I Iglesias-Platas, A Martin-Trujillo, D Cirillo, F Court, A Guillaumet-Adkins, ...
PLoS One 7 (6), e38907, 2012
272012
Discovery of protein–RNA networks
D Cirillo, CM Livi, F Agostini, GG Tartaglia
Molecular bioSystems 10 (7), 1632-1642, 2014
242014
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare. npj Digit. Med. 3, 81
D Cirillo, S Catuara-Solarz, C Morey, E Guney, L Subirats, S Mellino, ...
222020
omiXcore: a web server for prediction of protein interactions with large RNA
A Armaos, D Cirillo, G Gaetano Tartaglia
Bioinformatics 33 (19), 3104-3106, 2017
182017
By the company they keep: interaction networks define the binding ability of transcription factors
D Cirillo, T Botta-Orfila, GG Tartaglia
Nucleic acids research 43 (19), e125-e125, 2015
172015
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