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| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 510 | 2020 |
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| Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ... Genome biology 23 (1), 258, 2022 | 153 | 2022 |
| Paragraph: a graph-based structural variant genotyper for short-read sequence data S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ... Genome biology 20, 1-13, 2019 | 132 | 2019 |
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| Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ... Genome research 30 (9), 1258-1273, 2020 | 89 | 2020 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, ZB Lippman, ... BioRxiv, 2021.11. 18.469135, 2021 | 87 | 2021 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 59 | 2020 |
| Jasmine and Iris: population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, A Battle, S Aganezov, MC Schatz Nature methods 20 (3), 408-417, 2023 | 37 | 2023 |
| Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... JCI insight 6 (6), 2021 | 29 | 2021 |
| Jasmine: Population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz BioRxiv, 2021.05. 27.445886, 2021 | 24 | 2021 |
| Sapling: Accelerating suffix array queries with learned data models M Kirsche, A Das, MC Schatz Bioinformatics 37 (6), 744-749, 2021 | 22 | 2021 |
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| Genomic diversity of SARS-CoV-2 during early introduction into the United States National Capital Region PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... MedRxiv, 2020 | 14 | 2020 |
| Multi-tissue integrative analysis of personal epigenomes J Rozowsky, J Drenkow, Y Yang, G Gursoy, T Galeev, B Borsari, ... BioRxiv, 2021 | 7 | 2021 |
| A complete human reference genome improves variant calling for population and clinical genomics S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... bioRxiv (to appear), 2021 | 4 | 2021 |
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| The human reference genome is finally complete DC Soto, M Kirsche, SM Yan, S Zarate TheScienceBreaker 9 (3), 2023 | | 2023 |
