Kazutaka Katoh
Kazutaka Katoh
IFReC, Osaka University / CBRC, AIST
Verified email at biken.osaka-u.ac.jp
Title
Cited by
Cited by
Year
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
K Katoh, DM Standley
Molecular biology and evolution 30 (4), 772-780, 2013
158242013
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh, K Misawa, K Kuma, T Miyata
Nucleic acids research 30 (14), 3059-3066, 2002
88552002
MAFFT version 5: improvement in accuracy of multiple sequence alignment
K Katoh, K Kuma, H Toh, T Miyata
Nucleic acids research 33 (2), 511-518, 2005
41092005
Recent developments in the MAFFT multiple sequence alignment program
K Katoh, H Toh
Briefings in bioinformatics 9 (4), 286-298, 2008
31662008
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
K Katoh, J Rozewicki, KD Yamada
Briefings in bioinformatics 20 (4), 1160-1166, 2019
13762019
Multiple alignment of DNA sequences with MAFFT
K Katoh, G Asimenos, H Toh
Bioinformatics for DNA sequence analysis, 39-64, 2009
10802009
Parallelization of the MAFFT multiple sequence alignment program
K Katoh, H Toh
Bioinformatics 26 (15), 1899-1900, 2010
6152010
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
K Katoh, H Toh
BMC bioinformatics 9 (1), 212, 2008
5312008
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
I Sela, H Ashkenazy, K Katoh, T Pupko
Nucleic acids research 43 (W1), W7-W14, 2015
3722015
MAFFT: iterative refinement and additional methods
K Katoh, DM Standley
Multiple sequence alignment methods, 131-146, 2014
2722014
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
S Kuraku, CM Zmasek, O Nishimura, K Katoh
Nucleic acids research 41 (W1), W22-W28, 2013
2412013
A simple method to control over-alignment in the MAFFT multiple sequence alignment program
K Katoh, DM Standley
Bioinformatics 32 (13), 1933-1942, 2016
2202016
Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA–coded proteins
N Iwabe, Y Hara, Y Kumazawa, K Shibamoto, Y Saito, T Miyata, K Katoh
Molecular biology and evolution 22 (4), 810-813, 2005
1942005
Parallelization of MAFFT for large-scale multiple sequence alignments
T Nakamura, KD Yamada, K Tomii, K Katoh
Bioinformatics 1, 3, 2018
1862018
Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
KD Yamada, K Tomii, K Katoh
Bioinformatics 32 (21), 3246-3251, 2016
1532016
Adding unaligned sequences into an existing alignment using MAFFT and LAST
K Katoh, MC Frith
Bioinformatics 28 (23), 3144-3146, 2012
1472012
Improvement in the accuracy of multiple sequence alignment program MAFFT
K Katoh, K Kuma, T Miyata, H Toh
Genome informatics 16 (1), 22-33, 2005
1442005
Monophyly of lampreys and hagfishes supported by nuclear DNA–coded genes
S Kuraku, D Hoshiyama, K Katoh, H Suga, T Miyata
Journal of molecular evolution 49 (6), 729-735, 1999
1311999
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
K Kikugawa, K Katoh, S Kuraku, H Sakurai, O Ishida, N Iwabe, T Miyata
BMC biology 2 (1), 3, 2004
1162004
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences
K Katoh, H Toh
Bioinformatics 23 (3), 372-374, 2007
912007
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Articles 1–20