| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2503 | 2015 |
| Origins of the E. coli strain causing an outbreak of hemolytic–uremic syndrome in Germany DA Rasko, DR Webster, JW Sahl, A Bashir, N Boisen, F Scheutz, ... New England Journal of Medicine 365 (8), 709-717, 2011 | 1088 | 2011 |
| Multi-platform discovery of haplotype-resolved structural variation in human genomes MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ... Nature communications 10 (1), 1784, 2019 | 821 | 2019 |
| Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding KJ McKernan, HE Peckham, GL Costa, SF McLaughlin, Y Fu, EF Tsung, ... Genome research 19 (9), 1527-1541, 2009 | 818 | 2009 |
| Extensive sequencing of seven human genomes to characterize benchmark reference materials JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ... Scientific data 3 (1), 1-26, 2016 | 735 | 2016 |
| Assembly and diploid architecture of an individual human genome via single-molecule technologies M Pendleton, R Sebra, AWC Pang, A Ummat, O Franzen, T Rausch, ... Nature methods 12 (8), 780-786, 2015 | 541 | 2015 |
| A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 368* | 2020 |
| Diversified microbiota of meconium is affected by maternal diabetes status J Hu, Y Nomura, A Bashir, H Fernandez-Hernandez, S Itzkowitz, Z Pei, ... PloS one 8 (11), e78257, 2013 | 307 | 2013 |
| Deep diversification of an AAV capsid protein by machine learning DH Bryant, A Bashir, S Sinai, NK Jain, PJ Ogden, PF Riley, GM Church, ... Nature Biotechnology 39 (6), 691-696, 2021 | 277 | 2021 |
| A hybrid approach for the automated finishing of bacterial genomes A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ... Nature biotechnology 30 (7), 701-707, 2012 | 231 | 2012 |
| A geometric approach for classification and comparison of structural variants S Sindi, E Helman, A Bashir, BJ Raphael Bioinformatics 25 (12), i222-i230, 2009 | 209 | 2009 |
| Characterizing and overriding the structural mechanism of the quizartinib-resistant FLT3 “gatekeeper” F691L mutation with PLX3397 CC Smith, C Zhang, KC Lin, EA Lasater, Y Zhang, E Massi, LE Damon, ... Cancer discovery 5 (6), 668-679, 2015 | 180 | 2015 |
| Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer A Bashir, S Volik, C Collins, V Bafna, BJ Raphael PLoS computational biology 4 (4), e1000051, 2008 | 159 | 2008 |
| Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community … N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ... Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014 | 149 | 2014 |
| Conserved noncoding sequences in the grasses4 DC Inada, A Bashir, C Lee, BC Thomas, C Ko, SA Goff, M Freeling Genome Research 13 (9), 2030-2041, 2003 | 140 | 2003 |
| Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ... MBio 4 (4), 10.1128/mbio. 00398-13, 2013 | 139 | 2013 |
| Experimental selection of hypoxia-tolerant Drosophila melanogaster D Zhou, N Udpa, M Gersten, DAW Visk, A Bashir, J Xue, KA Frazer, ... Proceedings of the National Academy of Sciences 108 (6), 2349-2354, 2011 | 138 | 2011 |
| Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering O Franzén, J Hu, X Bao, SH Itzkowitz, I Peter, A Bashir Microbiome 3, 1-14, 2015 | 107 | 2015 |
| Human-specific tandem repeat expansion and differential gene expression during primate evolution A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ... Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019 | 104 | 2019 |
| Characterization of structural variants with single molecule and hybrid sequencing approaches A Ritz, A Bashir, S Sindi, D Hsu, I Hajirasouliha, BJ Raphael Bioinformatics 30 (24), 3458-3466, 2014 | 104 | 2014 |
Harm van BakelAssociate Professor, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
