Hythem Sidky
Title
Cited by
Cited by
Year
SSAGES: software suite for advanced general ensemble simulations
H Sidky, YJ Colón, J Helfferich, BJ Sikora, C Bezik, W Chu, F Giberti, ...
The Journal of chemical physics 148 (4), 044104, 2018
522018
Learning free energy landscapes using artificial neural networks
H Sidky, JK Whitmer
The Journal of chemical physics 148 (10), 104111, 2018
422018
Role of associative charging in the entropy–energy balance of polyelectrolyte complexes
VS Rathee, H Sidky, BJ Sikora, JK Whitmer
Journal of the American Chemical Society 140 (45), 15319-15328, 2018
382018
Adaptive enhanced sampling by force-biasing using neural networks
AZ Guo, E Sevgen, H Sidky, JK Whitmer, JA Hubbell, JJ de Pablo
The Journal of chemical physics 148 (13), 134108, 2018
272018
Nonlinear discovery of slow molecular modes using state-free reversible VAMPnets
W Chen, H Sidky, AL Ferguson
The Journal of chemical physics 150 (21), 214114, 2019
242019
Weak polyelectrolyte complexation driven by associative charging
VS Rathee, AJ Zervoudakis, H Sidky, BJ Sikora, JK Whitmer
The Journal of chemical physics 148 (11), 114901, 2018
202018
Explicit ion effects on the charge and conformation of weak polyelectrolytes
VS Rathee, H Sidky, BJ Sikora, JK Whitmer
Polymers 11 (1), 183, 2019
172019
In Silico Measurement of Elastic Moduli of Nematic Liquid Crystals
H Sidky, JJ de Pablo, JK Whitmer
Physical review letters 120 (10), 107801, 2018
142018
Machine learning for collective variable discovery and enhanced sampling in biomolecular simulation
H Sidky, W Chen, AL Ferguson
Molecular Physics 118 (5), e1737742, 2020
132020
Hierarchical coupling of first-principles molecular dynamics with advanced sampling methods
E Sevgen, F Giberti, H Sidky, JK Whitmer, G Galli, F Gygi, JJ de Pablo
Journal of chemical theory and computation 14 (6), 2881-2888, 2018
122018
Simulating the thermodynamics of charging in weak polyelectrolytes: the Debye–Hückel limit
VS Rathee, BJ Sikora, H Sidky, JK Whitmer
Materials Research Express 5 (1), 014010, 2018
122018
Discovery of self-assembling π-conjugated peptides by active learning-directed coarse-grained molecular simulation
K Shmilovich, RA Mansbach, H Sidky, OE Dunne, SS Panda, JD Tovar, ...
The Journal of Physical Chemistry B 124 (19), 3873-3891, 2020
92020
Elastic response and phase behavior in binary liquid crystal mixtures
H Sidky, JK Whitmer
Soft Matter 12 (19), 4489-4498, 2016
92016
Elastic properties of common Gay–Berne nematogens from density of states (DOS) simulations
H Sidky, JK Whitmer
Liquid Crystals 43 (13-15), 2285-2299, 2016
82016
Capabilities and limitations of time-lagged autoencoders for slow mode discovery in dynamical systems
W Chen, H Sidky, AL Ferguson
The Journal of Chemical Physics 151 (6), 064123, 2019
72019
The Emergent Nematic Phase in Ionic Chromonic Liquid Crystals
H Sidky, JK Whitmer
The Journal of Physical Chemistry B 121 (27), 6691-6698, 2017
72017
High-resolution Markov state models for the dynamics of Trp-cage miniprotein constructed over slow folding modes identified by state-free reversible VAMPnets
H Sidky, W Chen, AL Ferguson
The Journal of Physical Chemistry B 123 (38), 7999-8009, 2019
62019
Reliable mixture critical point computation using polynomial homotopy continuation
H Sidky, JK Whitmer, D Mehta
AIChE Journal 62 (12), 4497-4507, 2016
62016
Novel elastic response in twist-bend nematic models
J Shi, H Sidky, JK Whitmer
Soft matter 15 (41), 8219-8226, 2019
42019
Combined force-frequency sampling for simulation of systems having rugged free energy landscapes
E Sevgen, AZ Guo, H Sidky, JK Whitmer, JJ de Pablo
Journal of chemical theory and computation 16 (3), 1448-1455, 2020
32020
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Articles 1–20