Brendan Frey
Brendan Frey
Founder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of Toronto
Verified email at psi.toronto.edu - Homepage
Title
Cited by
Cited by
Year
Factor graphs and the sum-product algorithm
FR Kschischang, BJ Frey, HA Loeliger
IEEE Transactions on information theory 47 (2), 498-519, 2001
69492001
Clustering by passing messages between data points
BJ Frey, D Dueck
science 315 (5814), 972-976, 2007
58012007
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe
Nature genetics 40 (12), 1413-1415, 2008
30652008
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning
B Alipanahi, A Delong, MT Weirauch, BJ Frey
Nature biotechnology 33 (8), 831-838, 2015
13102015
Adversarial autoencoders
A Makhzani, J Shlens, N Jaitly, I Goodfellow, B Frey
arXiv preprint arXiv:1511.05644, 2015
12822015
The" wake-sleep" algorithm for unsupervised neural networks
GE Hinton, P Dayan, BJ Frey, RM Neal
Science 268 (5214), 1158-1161, 1995
10731995
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172-177, 2013
9272013
Deciphering the splicing code
Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai, BJ Blencowe, ...
Nature 465 (7294), 53-59, 2010
8522010
The human splicing code reveals new insights into the genetic determinants of disease
HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ...
Science 347 (6218), 2015
8022015
The evolutionary landscape of alternative splicing in vertebrate species
NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ...
Science 338 (6114), 1587-1593, 2012
7262012
Graphical models for machine learning and digital communication
BJ Frey, JF Brendan, BJ Frey
MIT press, 1998
7241998
Iterative decoding of compound codes by probability propagation in graphical models
FR Kschischang, BJ Frey
IEEE Journal on Selected Areas in Communications 16 (2), 219-230, 1998
5101998
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ...
Cell 125 (1), 173-186, 2006
5012006
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast
AB Parsons, A Lopez, IE Givoni, DE Williams, CA Gray, J Porter, G Chua, ...
Cell 126 (3), 611-625, 2006
4692006
Using expression profiling data to identify human microRNA targets
JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ...
Nature methods 4 (12), 1045-1049, 2007
4192007
A revolution: Belief propagation in graphs with cycles
BJ Frey, DJC MacKay
Advances in neural information processing systems, 479-485, 1998
4191998
Widespread intron retention in mammals functionally tunes transcriptomes
U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ...
Genome research 24 (11), 1774-1786, 2014
3712014
Deep learning of the tissue-regulated splicing code
MKK Leung, HY Xiong, LJ Lee, BJ Frey
Bioinformatics 30 (12), i121-i129, 2014
3512014
The functional landscape of mouse gene expression
W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, ...
Journal of biology 3 (5), 1-22, 2004
3452004
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
Q Pan, O Shai, C Misquitta, W Zhang, AL Saltzman, N Mohammad, ...
Molecular cell 16 (6), 929-941, 2004
3392004
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Articles 1–20