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David B Bernstein
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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ...
Nature protocols 16 (11), 5030-5082, 2021
95*2021
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
DB Bernstein, S Sulheim, E Almaas, D Segrč
Genome Biology 22, 1-22, 2021
932021
Coordinated regulation of acid resistance in Escherichia coli
P Aquino, B Honda, S Jaini, A Lyubetskaya, K Hosur, JG Chiu, I Ekladious, ...
BMC systems biology 11, 1-15, 2017
662017
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome
DB Bernstein, FE Dewhirst, D Segre
Elife 8, e39733, 2019
38*2019
Enhancing microbiome research through genome-scale metabolic modeling
NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ...
MSystems 6 (6), e00599-21, 2021
16*2021
Construction and modeling of a coculture microplate for real-time measurement of microbial interactions
C Jo, DB Bernstein, N Vaisman, HM Frydman, D Segrč
Msystems 8 (2), e00017-21, 2023
11*2023
Elucidating the fuzziness in physician decision making in ARDS
DB Bernstein, B Nguyen, GB Allen, JHT Bates
Journal of clinical monitoring and computing 27, 357-363, 2013
102013
Controlling mechanical ventilation in acute respiratory distress syndrome with fuzzy logic
B Nguyen, DB Bernstein, JHT Bates
Journal of critical care 29 (4), 551-556, 2014
92014
Stoichiometric modeling of artificial string chemistries reveals constraints on metabolic network structure
D Moyer, AR Pacheco, DB Bernstein, D Segrč
Journal of Molecular Evolution 89 (7), 472-483, 2021
6*2021
Evaluating E. coli genome‐scale metabolic model accuracy with high‐throughput mutant fitness data
DB Bernstein, B Akkas, MN Price, AP Arkin
Molecular Systems Biology 19 (12), e11566, 2023
3*2023
Probabilistic metabolic modeling of microbial communities
DB Bernstein
Boston University, 2020
2020
Fuzzy Logic Tool For Choosing Tidal Volume And PEEP In Acute Lung Injury
B Nguyen, DB Bernstein, JHT Bates
A48. MECHANICAL VENTILATION, A1683-A1683, 2012
2012
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Articles 1–12