| Fast, sensitive and accurate integration of single-cell data with Harmony I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ... Nature methods 16 (12), 1289-1296, 2019 | 301 | 2019 |
| Distinct fibroblast subsets drive inflammation and damage in arthritis AP Croft, J Campos, K Jansen, JD Turner, J Marshall, M Attar, L Savary, ... Nature 570 (7760), 246-251, 2019 | 137 | 2019 |
| BioNetGen 2.2: advances in rule-based modeling LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ... Bioinformatics 32 (21), 3366-3368, 2016 | 126 | 2016 |
| CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015 | 64 | 2015 |
| Mixed-effects association of single cells identifies an expanded effector CD4+ T cell subset in rheumatoid arthritis CY Fonseka, DA Rao, NC Teslovich, I Korsunsky, SK Hannes, ... Science translational medicine 10 (463), 2018 | 49 | 2018 |
| Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions M Gutierrez-Arcelus, N Teslovich, AR Mola, RB Polidoro, A Nathan, H Kim, ... Nature communications 10 (1), 1-15, 2019 | 44 | 2019 |
| Notch signalling drives synovial fibroblast identity and arthritis pathology K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ... Nature 582 (7811), 259-264, 2020 | 21 | 2020 |
| Persons with chronic spinal cord injury have decreased natural killer cell and increased toll-like receptor/inflammatory gene expression P Herman, A Stein, K Gibbs, I Korsunsky, P Gregersen, O Bloom Journal of neurotrauma 35 (15), 1819-1829, 2018 | 19 | 2018 |
| Molecular signatures in systemic lupus erythematosus: distinction between disease flare and infection M Mackay, M Oswald, J Sanchez-Guerrero, J Lichauco, C Aranow, ... Lupus science & medicine 3 (1), e000159, 2016 | 19 | 2016 |
| Novel method for high-throughput full-length IGHV-DJ sequencing of the immune repertoire from bulk B-cells with single-cell resolution S Vergani, I Korsunsky, AN Mazzarello, G Ferrer, N Chiorazzi, D Bagnara Frontiers in immunology 8, 1157, 2017 | 16 | 2017 |
| Fast, sensitive, and flexible integration of single cell data with Harmony I Korsunsky, J Fan, K Slowikowski, F Zhang, K Wei, Y Baglaenko, ... Biorxiv, 461954, 2018 | 10 | 2018 |
| Systems biology of cancer: a challenging expedition for clinical and quantitative biologists I Korsunsky, K McGovern, T LaGatta, L Olde Loohuis, ... Frontiers in bioengineering and biotechnology 2, 27, 2014 | 10 | 2014 |
| Two microRNA signatures for malignancy and immune infiltration predict overall survival in advanced epithelial ovarian cancer I Korsunsky, J Parameswaran, I Shapira, J Lovecchio, A Menzin, J Whyte, ... Journal of Investigative Medicine 65 (7), 1068-1076, 2017 | 9 | 2017 |
| IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation F Zhang, JR Mears, L Shakib, JI Beynor, S Shanaj, I Korsunsky, A Nathan, ... bioRxiv, 2020 | 7 | 2020 |
| Inference of cancer progression models with biological noise I Korsunsky, D Ramazzotti, G Caravagna, B Mishra arXiv preprint arXiv:1408.6032, 2014 | 5 | 2014 |
| Presto scales Wilcoxon and auROC analyses to millions of observations I Korsunsky, A Nathan, N Millard, S Raychaudhuri BioRxiv, 653253, 2019 | 4 | 2019 |
| Fast, sensitive, and accurate integration of single cell data with Harmony. bioRxiv I Korsunsky, J Fan, K Slowikowski, F Zhang, K Wei, Y Baglaenko, ... Cold Spring Harbor Laboratory, 2018 | 2 | 2018 |
| Mixed effects association of single cells identifies an expanded Th1-skewed cytotoxic effector CD4+ T cell subset in rheumatoid arthritis CY Fonseka, DA Rao, NC Teslovich, SK Hannes, K Slowikowsi, ... bioRxiv, 172403, 2018 | 2 | 2018 |
| Synovial fibroblast positional identity controlled by inductive Notch signaling underlies pathologic damage in inflammatory arthritis K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ... Nature, 2020 | 1 | 2020 |
| Survival analysis using probabilistic graphical models and probabilistic causation with applications to cancer genomics I Korsunsky New York University, 2017 | 1 | 2017 |
