Ilya Korsunsky
Ilya Korsunsky
Harvard Medical School
Verified email at bwh.harvard.edu
Title
Cited by
Cited by
Year
Fast, sensitive and accurate integration of single-cell data with Harmony
I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ...
Nature methods 16 (12), 1289-1296, 2019
3012019
Distinct fibroblast subsets drive inflammation and damage in arthritis
AP Croft, J Campos, K Jansen, JD Turner, J Marshall, M Attar, L Savary, ...
Nature 570 (7760), 246-251, 2019
1372019
BioNetGen 2.2: advances in rule-based modeling
LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ...
Bioinformatics 32 (21), 3366-3368, 2016
1262016
CAPRI: efficient inference of cancer progression models from cross-sectional data
D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ...
Bioinformatics 31 (18), 3016-3026, 2015
642015
Mixed-effects association of single cells identifies an expanded effector CD4+ T cell subset in rheumatoid arthritis
CY Fonseka, DA Rao, NC Teslovich, I Korsunsky, SK Hannes, ...
Science translational medicine 10 (463), 2018
492018
Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions
M Gutierrez-Arcelus, N Teslovich, AR Mola, RB Polidoro, A Nathan, H Kim, ...
Nature communications 10 (1), 1-15, 2019
442019
Notch signalling drives synovial fibroblast identity and arthritis pathology
K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ...
Nature 582 (7811), 259-264, 2020
212020
Persons with chronic spinal cord injury have decreased natural killer cell and increased toll-like receptor/inflammatory gene expression
P Herman, A Stein, K Gibbs, I Korsunsky, P Gregersen, O Bloom
Journal of neurotrauma 35 (15), 1819-1829, 2018
192018
Molecular signatures in systemic lupus erythematosus: distinction between disease flare and infection
M Mackay, M Oswald, J Sanchez-Guerrero, J Lichauco, C Aranow, ...
Lupus science & medicine 3 (1), e000159, 2016
192016
Novel method for high-throughput full-length IGHV-DJ sequencing of the immune repertoire from bulk B-cells with single-cell resolution
S Vergani, I Korsunsky, AN Mazzarello, G Ferrer, N Chiorazzi, D Bagnara
Frontiers in immunology 8, 1157, 2017
162017
Fast, sensitive, and flexible integration of single cell data with Harmony
I Korsunsky, J Fan, K Slowikowski, F Zhang, K Wei, Y Baglaenko, ...
Biorxiv, 461954, 2018
102018
Systems biology of cancer: a challenging expedition for clinical and quantitative biologists
I Korsunsky, K McGovern, T LaGatta, L Olde Loohuis, ...
Frontiers in bioengineering and biotechnology 2, 27, 2014
102014
Two microRNA signatures for malignancy and immune infiltration predict overall survival in advanced epithelial ovarian cancer
I Korsunsky, J Parameswaran, I Shapira, J Lovecchio, A Menzin, J Whyte, ...
Journal of Investigative Medicine 65 (7), 1068-1076, 2017
92017
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation
F Zhang, JR Mears, L Shakib, JI Beynor, S Shanaj, I Korsunsky, A Nathan, ...
bioRxiv, 2020
72020
Inference of cancer progression models with biological noise
I Korsunsky, D Ramazzotti, G Caravagna, B Mishra
arXiv preprint arXiv:1408.6032, 2014
52014
Presto scales Wilcoxon and auROC analyses to millions of observations
I Korsunsky, A Nathan, N Millard, S Raychaudhuri
BioRxiv, 653253, 2019
42019
Fast, sensitive, and accurate integration of single cell data with Harmony. bioRxiv
I Korsunsky, J Fan, K Slowikowski, F Zhang, K Wei, Y Baglaenko, ...
Cold Spring Harbor Laboratory, 2018
22018
Mixed effects association of single cells identifies an expanded Th1-skewed cytotoxic effector CD4+ T cell subset in rheumatoid arthritis
CY Fonseka, DA Rao, NC Teslovich, SK Hannes, K Slowikowsi, ...
bioRxiv, 172403, 2018
22018
Synovial fibroblast positional identity controlled by inductive Notch signaling underlies pathologic damage in inflammatory arthritis
K Wei, I Korsunsky, JL Marshall, A Gao, GFM Watts, T Major, AP Croft, ...
Nature, 2020
12020
Survival analysis using probabilistic graphical models and probabilistic causation with applications to cancer genomics
I Korsunsky
New York University, 2017
12017
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Articles 1–20