| Mobyle: a new full web bioinformatics framework B Néron, H Ménager, C Maufrais, N Joly, J Maupetit, S Letort, S Carrere, ... Bioinformatics 25 (22), 3005-3011, 2009 | 378 | 2009 |
| MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha PLOS ONE 9 (10), e110726, 2014 | 270 | 2014 |
| Common workflow language, v1. 0 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... eScholarship, University of California 10, m9, 2016 | 248* | 2016 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 157 | 2016 |
| Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities S Cohen-Boulakia, K Belhajjame, O Collin, J Chopard, C Froidevaux, ... Future Generation Computer Systems 75, 284-298, 2017 | 146 | 2017 |
| Methods included: standardizing computational reuse and portability with the common workflow language MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022 | 69 | 2022 |
| The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis C Addi, A Presle, S Frémont, F Cuvelier, M Rocancourt, F Milin, ... Nature communications 11 (1), 1941, 2020 | 48 | 2020 |
| BioShaDock: a community driven bioinformatics shared Docker-based tools registry F Moreews, O Sallou, H Ménager, Y Le Bras, C Monjeaud, C Blanchet, ... F1000Research, 2015 | 48* | 2015 |
| The bio. tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ... Genome biology 20 (1), 1-4, 2019 | 42 | 2019 |
| On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria A Calvo-Villamañán, JW Ng, R Planel, H Ménager, A Chen, L Cui, ... Nucleic acids research 48 (11), e64-e64, 2020 | 41 | 2020 |
| Recommendations for the packaging and containerizing of bioinformatics software B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ... F1000Research 7, 2018 | 39 | 2018 |
| A public Galaxy platform at Pasteur used as an execution engine for web services F Mareuil, O Doppelt-Azeroual, H Ménager, F Mareuil, ... F1000Research 6 (10.7490), f1000research, 2017 | 37 | 2017 |
| Implementing FAIR digital objects in the EOSC-Life workflow collaboratory C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ... Zenodo, 2021 | 31 | 2021 |
| Semantic map of services for structural bioinformatics P Tufféry, Z Lacroix, H Ménager 18th International Conference on Scientific and Statistical Database …, 2006 | 25 | 2006 |
| Community curation of bioinformatics software and data resources J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ... Briefings in bioinformatics 21 (5), 1697-1705, 2020 | 21 | 2020 |
| The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators R Torchet, K Druart, LC Ruano, A Moine-Franel, H Borges, ... Bioinformatics 37 (1), 89-96, 2021 | 19 | 2021 |
| Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions Q Lamy-Besnier, B Brancotte, H Ménager, L Debarbieux Bioinformatics 37 (17), 2798, 2021 | 17 | 2021 |
| ReGaTE: registration of galaxy tools in elixir O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ... GigaScience 6 (6), gix022, 2017 | 15* | 2017 |
| Using registries to integrate bioinformatics tools and services into workbench environments H Ménager, M Kalaš, K Rapacki, J Ison International Journal on Software Tools for Technology Transfer 18, 581-586, 2016 | 14 | 2016 |
| Bioinformatics services discovery using ontology classification H Ménager, Z Lacroix, P Tufféry 2007 IEEE Congress on Services (Services 2007), 106-113, 2007 | 13 | 2007 |
Michael R. CrusoeCommon Workflow Language project, and othersVerified email at commonwl.org
