Hervé Ménager
Hervé Ménager
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Cited by
Cited by
Mobyle: a new full web bioinformatics framework
B Néron, H Ménager, C Maufrais, N Joly, J Maupetit, S Letort, S Carrere, ...
Bioinformatics 25 (22), 3005-3011, 2009
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha
PLOS ONE 9 (10), e110726, 2014
Common workflow language, v1. 0
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
eScholarship, University of California 10, m9, 2016
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
S Cohen-Boulakia, K Belhajjame, O Collin, J Chopard, C Froidevaux, ...
Future Generation Computer Systems 75, 284-298, 2017
Methods included: standardizing computational reuse and portability with the common workflow language
MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ...
Communications of the ACM 65 (6), 54-63, 2022
The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis
C Addi, A Presle, S Frémont, F Cuvelier, M Rocancourt, F Milin, ...
Nature communications 11 (1), 1941, 2020
BioShaDock: a community driven bioinformatics shared Docker-based tools registry
F Moreews, O Sallou, H Ménager, Y Le Bras, C Monjeaud, C Blanchet, ...
F1000Research, 2015
The bio. tools registry of software tools and data resources for the life sciences
J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ...
Genome biology 20 (1), 1-4, 2019
On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria
A Calvo-Villamañán, JW Ng, R Planel, H Ménager, A Chen, L Cui, ...
Nucleic acids research 48 (11), e64-e64, 2020
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
A public Galaxy platform at Pasteur used as an execution engine for web services
F Mareuil, O Doppelt-Azeroual, H Ménager, F Mareuil, ...
F1000Research 6 (10.7490), f1000research, 2017
Implementing FAIR digital objects in the EOSC-Life workflow collaboratory
C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ...
Zenodo, 2021
Semantic map of services for structural bioinformatics
P Tufféry, Z Lacroix, H Ménager
18th International Conference on Scientific and Statistical Database …, 2006
Community curation of bioinformatics software and data resources
J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ...
Briefings in bioinformatics 21 (5), 1697-1705, 2020
The iPPI-DB initiative: a community-centered database of protein–protein interaction modulators
R Torchet, K Druart, LC Ruano, A Moine-Franel, H Borges, ...
Bioinformatics 37 (1), 89-96, 2021
Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
Q Lamy-Besnier, B Brancotte, H Ménager, L Debarbieux
Bioinformatics 37 (17), 2798, 2021
ReGaTE: registration of galaxy tools in elixir
O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ...
GigaScience 6 (6), gix022, 2017
Using registries to integrate bioinformatics tools and services into workbench environments
H Ménager, M Kalaš, K Rapacki, J Ison
International Journal on Software Tools for Technology Transfer 18, 581-586, 2016
Bioinformatics services discovery using ontology classification
H Ménager, Z Lacroix, P Tufféry
2007 IEEE Congress on Services (Services 2007), 106-113, 2007
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