Shay Zakov
Shay Zakov
Unknown affiliation
Verified email at cs.bgu.ac.il
Title
Cited by
Cited by
Year
Sparse RNA folding: Time and space efficient algorithms
R Backofen, D Tsur, S Zakov, M Ziv-Ukelson
Journal of Discrete Algorithms 9 (1), 12-31, 2011
772011
Rich parameterization improves RNA structure prediction
S Zakov, Y Goldberg, M Elhadad, M Ziv-Ukelson
Journal of Computational Biology 18 (11), 1525-1542, 2011
552011
An algorithmic approach for breakage-fusion-bridge detection in tumor genomes
S Zakov, M Kinsella, V Bafna
Proceedings of the National Academy of Sciences 110 (14), 5546-5551, 2013
362013
Reducing the worst case running times of a family of RNA and CFG problems, using Valiant's approach.
S Zakov, D Tsur, M Ziv-Ukelson
Algorithms for Molecular Biology 6 (1), 20, 2011
302011
Unrooted unordered homeomorphic subtree alignment of RNA trees.
N Milo, S Zakov, E Katzenelson, E Bachmat, Y Dinitz, M Ziv-Ukelson
Algorithms for Molecular Biology 8 (1), 13, 2013
162013
Predicting carriers of ongoing selective sweeps without knowledge of the favored allele
R Ronen, G Tesler, A Akbari, S Zakov, NA Rosenberg, V Bafna
PLoS Genet 11 (9), e1005527, 2015
142015
Reconstructing breakage fusion bridge architectures using noisy copy numbers
S Zakov, V Bafna
Journal of Computational Biology 22 (6), 577-594, 2015
112015
Edit distance with duplications and contractions revisited
T Pinhas, D Tsur, S Zakov, M Ziv-Ukelson
Annual Symposium on Combinatorial Pattern Matching, 441-454, 2011
72011
Efficient edit distance with duplications and contractions
T Pinhas, S Zakov, D Tsur, M Ziv-Ukelson
Algorithms for Molecular Biology 8 (1), 1-28, 2013
62013
Evaluating genome architecture of a complex region via generalized bipartite matching
C Lo, S Kim, S Zakov, V Bafna
BMC bioinformatics 14 (5), 1-10, 2013
62013
Research in Computational Molecular Biology
D Newkirk, J Biesinger, A Chon, K Yokomori, X Xie
Springer, 2011
42011
Have your spaghetti and eat it too: evolutionary algorithmics and post-evolutionary analysis
K Wolfson, S Zakov, M Sipper, M Ziv-Ukelson
Genetic Programming and Evolvable Machines 12 (2), 121-160, 2011
32011
RNA tree comparisons via unrooted unordered alignments
N Milo, S Zakov, E Katzenelson, E Bachmat, Y Dinitz, M Ziv-Ukelson
International Workshop on Algorithms in Bioinformatics, 135-148, 2012
22012
Haplotype Allele Frequency (HAF) score: predicting carriers of ongoing selective sweeps without knowledge of the adaptive allele
R Ronen, G Tesler, A Akbari, S Zakov, NA Rosenberg, V Bafna
International Conference on Research in Computational Molecular Biology, 276-280, 2015
12015
Recent Results on Three Problems in Comparative Structural RNAomics
S Zakov, N Milo, T Pinhas, S Yogev, E Katzenelson, E Bachmat, Y Dinitz, ...
Proceedings of 1st workshop on Computational Methods for Structural RNAs …, 2014
12014
Detecting Breakage Fusion Bridge cycles in tumor genomes--an algorithmic approach
S Zakov, M Kinsella, V Bafna
arXiv preprint arXiv:1301.2610, 2013
12013
Sparsification in algebraic dynamic programming
M Möhl, C Schmiedl, S Zakov
Unpublished Proceedings of the German Confer-955 ence on Bioinformatics (GCB …, 2011
12011
Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele
R Ronen, G Tesler, A Akbari, S Zakov, NA Rosenberg, V Bafna
PLoS genetics 12 (11), e1006472, 2016
2016
Algorithms for Prediction and Comparison of RNA Secondary Structures
S Zakov
Ben Gurion University of the Negev, 2012
2012
Supporting Material for the Paper: Rich Parameterization Improves RNA Structure Prediction
S Zakov, Y Goldberg, M Elhadad, M Ziv-Ukelson
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Articles 1–20