Andrew Oldfield
Andrew Oldfield
Researcher, IGH
Vahvistettu sähköpostiosoite verkkotunnuksessa
Molecular coupling of Tsix regulation and pluripotency
P Navarro, A Oldfield, J Legoupi, N Festuccia, A Dubois, M Attia, ...
Nature 468 (7322), 457-460, 2010
Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors
AJ Oldfield, P Yang, AE Conway, S Cinghu, JM Freudenberg, ...
Molecular cell 55 (5), 708-722, 2014
A prominent and conserved role for YY1 in Xist transcriptional activation
M Makhlouf, JF Ouimette, A Oldfield, P Navarro, D Neuillet, C Rougeulle
Nature communications 5 (1), 4878, 2014
Multi-omic profiling reveals dynamics of the phased progression of pluripotency
P Yang, SJ Humphrey, S Cinghu, R Pathania, AJ Oldfield, D Kumar, ...
Cell Systems 8 (5), 427-445. e10, 2019
The central role of PDR1 in the foundation of yeast drug resistance
V Fardeau, G Lelandais, A Oldfield, H Salin, S Lemoine, M Garcia, ...
Journal of Biological Chemistry 282 (7), 5063-5074, 2007
Intragenic enhancers attenuate host gene expression
S Cinghu, P Yang, JP Kosak, AE Conway, D Kumar, AJ Oldfield, ...
Molecular cell 68 (1), 104-117. e6, 2017
Decoding the function of bivalent chromatin in development and cancer
D Kumar, S Cinghu, AJ Oldfield, P Yang, R Jothi
Genome research 31 (12), 2170-2184, 2021
NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region
AJ Oldfield, T Henriques, D Kumar, AB Burkholder, S Cinghu, D Paulet, ...
Nature Communications 10 (1), 3072, 2019
Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition
E Agirre, AJ Oldfield, N Bellora, A Segelle, RF Luco
Nature communications 12 (1), 682, 2021
SETDB1/NSD-dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers
A Barral, G Pozo, L Ducrot, GL Papadopoulos, S Sauzet, AJ Oldfield, ...
Molecular cell 82 (4), 816-832. e12, 2022
Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis
S Cinghu, S Yellaboina, JM Freudenberg, S Ghosh, X Zheng, AJ Oldfield, ...
Proceedings of the National Academy of Sciences 111 (16), E1581-E1590, 2014
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells
P Yang, A Oldfield, T Kim, A Yang, JYH Yang, JWK Ho
Bioinformatics 33 (13), 1916-1920, 2017
Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning
HJ Kim, P Osteil, SJ Humphrey, S Cinghu, AJ Oldfield, E Patrick, ...
Nucleic acids research 48 (4), 1828-1842, 2020
IRFinder-S: a comprehensive suite to discover and explore intron retention
C Lorenzi, S Barriere, K Arnold, RF Luco, AJ Oldfield, W Ritchie
Genome Biology 22 (1), 1-13, 2021
A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants
JP Villemin, C Lorenzi, MS Cabrillac, A Oldfield, W Ritchie, RF Luco
BMC biology 19, 1-19, 2021
TALC: transcript-level aware long-read correction
L Broseus, A Thomas, AJ Oldfield, D Severac, E Dubois, W Ritchie
Bioinformatics 36 (20), 5000-5006, 2020
Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing
A Segelle, Y Nunez-Alvarez, AJ Oldfield, KM Webb, P Voigt, RF Luco
Cell Reports 38 (7), 2022
Integrative analysis reveals histone demethylase LSD1 promotes RNA polymerase II pausing
HJ Kim, P Li, T Kim, AJ Oldfield, X Zheng, P Yang
Iscience 25 (10), 2022
Histone marks are drivers of the splicing changes necessary for an epithelial-to-mesenchymal transition
A Segelle, Y Núñez-Álvarez, AJ Oldfield, KM Webb, P Voigt, RF Luco
bioRxiv, 2021.05. 04.442453, 2021
PAD2: interactive exploration of transcription factor genomic colocalization using ChIP-seq data
T Kim, HJ Kim, AJ Oldfield, P Yang
STAR protocols 4 (2), 102203, 2023
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Artikkelit 1–20