| Molecular coupling of Tsix regulation and pluripotency P Navarro, A Oldfield, J Legoupi, N Festuccia, A Dubois, M Attia, ... Nature 468 (7322), 457-460, 2010 | 228 | 2010 |
| Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors AJ Oldfield, P Yang, AE Conway, S Cinghu, JM Freudenberg, ... Molecular cell 55 (5), 708-722, 2014 | 197 | 2014 |
| A prominent and conserved role for YY1 in Xist transcriptional activation M Makhlouf, JF Ouimette, A Oldfield, P Navarro, D Neuillet, C Rougeulle Nature communications 5 (1), 4878, 2014 | 135 | 2014 |
| Multi-omic profiling reveals dynamics of the phased progression of pluripotency P Yang, SJ Humphrey, S Cinghu, R Pathania, AJ Oldfield, D Kumar, ... Cell Systems 8 (5), 427-445. e10, 2019 | 132 | 2019 |
| The central role of PDR1 in the foundation of yeast drug resistance V Fardeau, G Lelandais, A Oldfield, H Salin, S Lemoine, M Garcia, ... Journal of Biological Chemistry 282 (7), 5063-5074, 2007 | 97 | 2007 |
| Intragenic enhancers attenuate host gene expression S Cinghu, P Yang, JP Kosak, AE Conway, D Kumar, AJ Oldfield, ... Molecular cell 68 (1), 104-117. e6, 2017 | 93 | 2017 |
| Decoding the function of bivalent chromatin in development and cancer D Kumar, S Cinghu, AJ Oldfield, P Yang, R Jothi Genome research 31 (12), 2170-2184, 2021 | 82 | 2021 |
| Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition E Agirre, AJ Oldfield, N Bellora, A Segelle, RF Luco Nature communications 12 (1), 682, 2021 | 74 | 2021 |
| NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region AJ Oldfield, T Henriques, D Kumar, AB Burkholder, S Cinghu, D Paulet, ... Nature communications 10 (1), 3072, 2019 | 72 | 2019 |
| SETDB1/NSD-dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers A Barral, G Pozo, L Ducrot, GL Papadopoulos, S Sauzet, AJ Oldfield, ... Molecular cell 82 (4), 816-832. e12, 2022 | 48 | 2022 |
| Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing A Segelle, Y Nunez-Alvarez, AJ Oldfield, KM Webb, P Voigt, RF Luco Cell Reports 38 (7), 2022 | 28 | 2022 |
| Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis S Cinghu, S Yellaboina, JM Freudenberg, S Ghosh, X Zheng, AJ Oldfield, ... Proceedings of the National Academy of Sciences 111 (16), E1581-E1590, 2014 | 28 | 2014 |
| Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells P Yang, A Oldfield, T Kim, A Yang, JYH Yang, JWK Ho Bioinformatics 33 (13), 1916-1920, 2017 | 23 | 2017 |
| IRFinder-S: a comprehensive suite to discover and explore intron retention C Lorenzi, S Barriere, K Arnold, RF Luco, AJ Oldfield, W Ritchie Genome Biology 22, 1-13, 2021 | 22 | 2021 |
| A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants JP Villemin, C Lorenzi, MS Cabrillac, A Oldfield, W Ritchie, RF Luco BMC biology 19, 1-19, 2021 | 20 | 2021 |
| Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning HJ Kim, P Osteil, SJ Humphrey, S Cinghu, AJ Oldfield, E Patrick, ... Nucleic acids research 48 (4), 1828-1842, 2020 | 17 | 2020 |
| TALC: transcript-level aware long-read correction L Broseus, A Thomas, AJ Oldfield, D Severac, E Dubois, W Ritchie Bioinformatics 36 (20), 5000-5006, 2020 | 14 | 2020 |
| Integrative analysis reveals histone demethylase LSD1 promotes RNA polymerase II pausing HJ Kim, P Li, T Kim, AJ Oldfield, X Zheng, P Yang Iscience 25 (10), 2022 | 5 | 2022 |
| Histone marks are drivers of the splicing changes necessary for an epithelial-to-mesenchymal transition A Segelle, Y Núñez-Álvarez, AJ Oldfield, KM Webb, P Voigt, RF Luco bioRxiv, 2021.05. 04.442453, 2021 | 1 | 2021 |
| PAD2: interactive exploration of transcription factor genomic colocalization using ChIP-seq data T Kim, HJ Kim, AJ Oldfield, P Yang STAR protocols 4 (2), 102203, 2023 | | 2023 |
