| Guidelines for the use of flow cytometry and cell sorting in immunological studies A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ... European journal of immunology 49 (10), 1457-1973, 2019 | 1098 | 2019 |
| Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ... Nature methods 10 (3), 228-238, 2013 | 570 | 2013 |
| Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ... Cell stem cell 10 (3), 273-283, 2012 | 301 | 2012 |
| An immune clock of human pregnancy N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ... Science immunology 2 (15), eaan2946, 2017 | 291 | 2017 |
| Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ... Scientific reports 6 (1), 1-11, 2016 | 223 | 2016 |
| Rapid cell population identification in flow cytometry data N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman Cytometry Part A 79 (1), 6-13, 2011 | 200 | 2011 |
| Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities KD Davis, N Aghaeepour, AH Ahn, MS Angst, D Borsook, A Brenton, ... Nature Reviews Neurology 16 (7), 381-400, 2020 | 110 | 2020 |
| Flow cytometry bioinformatics K O'Neill, N Aghaeepour, J Špidlen, R Brinkman PLoS computational biology 9 (12), e1003365, 2013 | 104 | 2013 |
| Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'neill, H Zare, A Jalali, ... Bioinformatics 28 (7), 1009-1016, 2012 | 93 | 2012 |
| Multiomics Modeling of the Immunome, Transcriptome, Microbiome, Proteome, and Metabolome Adaptations During Human Pregnancy MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ... Bioinformatics, 2018 | 92 | 2018 |
| Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ... Nature medicine 24 (4), 474-483, 2018 | 83 | 2018 |
| Patient-specific immune states before surgery are strong correlates of surgical recovery GK Fragiadakis, B Gaudillière, EA Ganio, N Aghaeepour, M Tingle, ... Anesthesiology 123 (6), 1241-1255, 2015 | 74 | 2015 |
| Thinking outside the gate: single-cell assessments in multiple dimensions P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ... Immunity 42 (4), 591-592, 2015 | 72 | 2015 |
| A proteomic clock of human pregnancy N Aghaeepour, B Lehallier, Q Baca, EA Ganio, RJ Wong, MS Ghaemi, ... American journal of obstetrics and gynecology 218 (3), 347. e1-347. e14, 2018 | 66 | 2018 |
| RchyOptimyx: cellular hierarchy optimization for flow cytometry N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ... Cytometry Part A 81 (12), 1022-1030, 2012 | 66 | 2012 |
| Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ... Cell reports 22 (7), 1875-1888, 2018 | 62 | 2018 |
| A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ... Cytometry Part A 89 (1), 16-21, 2016 | 58 | 2016 |
| Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17 SK Maney, DR McIlwain, R Polz, AA Pandyra, B Sundaram, D Wolff, ... Science signaling 8 (401), ra109-ra109, 2015 | 57 | 2015 |
| CytoNorm: a normalization algorithm for cytometry data S Van Gassen, B Gaudilliere, MS Angst, Y Saeys, N Aghaeepour Cytometry Part A 97 (3), 268-278, 2020 | 53 | 2020 |
| Multicenter systems analysis of human blood reveals immature neutrophils in males and during pregnancy J Blazkova, S Gupta, Y Liu, B Gaudilliere, EA Ganio, CR Bolen, ... The Journal of Immunology 198 (6), 2479-2488, 2017 | 50 | 2017 |
