Guidelines for the use of flow cytometry and cell sorting in immunological studies A Cossarizza, HD Chang, A Radbruch, M Akdis, I Andrä, F Annunziato, ... European journal of immunology 47 (10), 1584-1797, 2017 | 579 | 2017 |
Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ... Nature methods 10 (3), 228-238, 2013 | 496 | 2013 |
Hematopoietic stem cell subtypes expand differentially during development and display distinct lymphopoietic programs C Benz, MR Copley, DG Kent, S Wohrer, A Cortes, N Aghaeepour, E Ma, ... Cell stem cell 10 (3), 273-283, 2012 | 265 | 2012 |
Rapid cell population identification in flow cytometry data N Aghaeepour, R Nikolic, HH Hoos, RR Brinkman Cytometry Part A 79 (1), 6-13, 2011 | 182 | 2011 |
An immune clock of human pregnancy N Aghaeepour, EA Ganio, D Mcilwain, AS Tsai, M Tingle, S Van Gassen, ... Science immunology 2 (15), 2017 | 170 | 2017 |
Standardizing flow cytometry immunophenotyping analysis from the Human ImmunoPhenotyping Consortium G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ... Scientific reports 6 (1), 1-11, 2016 | 170 | 2016 |
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'Neill, H Zare, A Jalali, ... Bioinformatics 28 (7), 1009-1016, 2012 | 86 | 2012 |
Flow cytometry bioinformatics K O'Neill, N Aghaeepour, J Špidlen, R Brinkman PLoS Comput Biol 9 (12), e1003365, 2013 | 85 | 2013 |
Thinking outside the gate: single-cell assessments in multiple dimensions P Kvistborg, C Gouttefangeas, N Aghaeepour, A Cazaly, ... Immunity 42 (4), 591-592, 2015 | 66 | 2015 |
RchyOptimyx: cellular hierarchy optimization for flow cytometry N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ... Cytometry Part A 81 (12), 1022-1030, 2012 | 62 | 2012 |
Patient-specific immune states before surgery are strong correlates of surgical recovery GK Fragiadakis, B Gaudilličre, EA Ganio, N Aghaeepour, M Tingle, ... Anesthesiology: The Journal of the American Society of Anesthesiologists 123 …, 2015 | 59 | 2015 |
Multiomics Modeling of the Immunome, Transcriptome, Microbiome, Proteome, and Metabolome Adaptations During Human Pregnancy MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ... Bioinformatics, 2018 | 50 | 2018 |
A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes N Aghaeepour, P Chattopadhyay, M Chikina, T Dhaene, S Van Gassen, ... Cytometry Part A 89 (1), 16-21, 2016 | 50 | 2016 |
Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse Z Good, J Sarno, A Jager, N Samusik, N Aghaeepour, EF Simonds, ... Nature medicine 24 (4), 474, 2018 | 48 | 2018 |
Deletions in the cytoplasmic domain of iRhom1 and iRhom2 promote shedding of the TNF receptor by the protease ADAM17 SK Maney, DR McIlwain, R Polz, AA Pandyra, B Sundaram, D Wolff, ... Science signaling 8 (401), ra109-ra109, 2015 | 46 | 2015 |
Implementing mass cytometry at the bedside to study the immunological basis of human diseases: distinctive immune features in patients with a history of term or preterm birth B Gaudilličre, EA Ganio, M Tingle, HL Lancero, GK Fragiadakis, QJ Baca, ... Cytometry Part A 87 (9), 817-829, 2015 | 46 | 2015 |
A proteomic clock of human pregnancy N Aghaeepour, B Lehallier, Q Baca, EA Ganio, RJ Wong, MS Ghaemi, ... American journal of obstetrics and gynecology 218 (3), 347. e1-347. e14, 2018 | 44 | 2018 |
Commonly occurring cell subsets in high-grade serous ovarian tumors identified by single-cell mass cytometry VD Gonzalez, N Samusik, TJ Chen, ES Savig, N Aghaeepour, DA Quigley, ... Cell reports 22 (7), 1875-1888, 2018 | 42 | 2018 |
Automated analysis of multidimensional flow cytometry data improves diagnostic accuracy between mantle cell lymphoma and small lymphocytic lymphoma H Zare, A Bashashati, R Kridel, N Aghaeepour, G Haffari, JM Connors, ... American journal of clinical pathology 137 (1), 75-85, 2012 | 42 | 2012 |
Consortium D, Hoos H N Aghaeepour, G Finak, C Flow Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of …, 2013 | 33 | 2013 |