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Xiao Yang
Xiao Yang
GeneGenieDx Corp
Verified email at broadinstitute.org
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Year
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
SK Gire, A Goba, KG Andersen, RSG Sealfon, DJ Park, L Kanneh, ...
science 345 (6202), 1369-1372, 2014
15042014
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ...
Annals of Oncology 31 (6), 745-759, 2020
9482020
A survey of error-correction methods for next-generation sequencing
X Yang, SP Chockalingam, S Aluru
Briefings in Bioinformatics 14 (1), 56-66, 2013
3302013
STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ...
BioRxiv, 120295, 2017
2292017
De novo assembly of highly diverse viral populations
X Yang, P Charlebois, S Gnerre, MG Coole, NJ Lennon, JZ Levin, J Qu, ...
BMC genomics 13, 1-13, 2012
2242012
Reptile: representative tiling for short read error correction
X Yang, KS Dorman, S Aluru
Bioinformatics 26 (20), 2526, 2010
1952010
Long-term engraftment and fetal globin induction upon BCL11A gene editing in bone-marrow-derived CD34+ hematopoietic stem and progenitor cells
KH Chang, SE Smith, T Sullivan, K Chen, Q Zhou, JA West, M Liu, Y Liu, ...
Molecular Therapy-Methods & Clinical Development 4, 137-148, 2017
1672017
ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
C Liu, X Yang, B Duffy, T Mohanakumar, RD Mitra, MC Zody, JD Pfeifer
Nucleic acids research 41 (14), e142-e142, 2013
1662013
V-Phaser 2: variant inference for viral populations
X Yang, P Charlebois, A Macalalad, MR Henn, MC Zody
BMC genomics 14, 1-10, 2013
1322013
High-throughput DNA sequence data compression
Z Zhu, Y Zhang, Z Ji, S He, X Yang
Briefings in bioinformatics 16 (1), 1-15, 2015
982015
Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
CM Malboeuf, X Yang, P Charlebois, J Qu, AM Berlin, M Casali, KN Pesko, ...
Nucleic acids research 41 (1), e13-e13, 2013
922013
Discovery of novel rhabdoviruses in the blood of healthy individuals from West Africa
MH Stremlau, KG Andersen, OA Folarin, JN Grove, I Odia, PE Ehiane, ...
PLoS neglected tropical diseases 9 (3), e0003631, 2015
672015
Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence …
YH Grad, R Newman, M Zody, X Yang, R Murphy, J Qu, CM Malboeuf, ...
Journal of virology 88 (13), 7286-7293, 2014
612014
Parallel de novo assembly of large genomes from high-throughput short reads
BG Jackson, M Regennitter, X Yang, PS Schnable, S Aluru
2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010
592010
PARALLEL-TCOFFEE: A parallel multiple sequence aligner.
J Zola, X Yang, A Rospondek, S Aluru
PDCS, 248-253, 2007
592007
Fluid spatial dynamics of West Nile virus in the United States: Rapid spread in a permissive host environment
F Di Giallonardo, JL Geoghegan, DE Docherty, RG McLean, MC Zody, ...
Journal of virology 90 (2), 862-872, 2016
542016
Light-weight reference-based compression of FASTQ data
Y Zhang, L Li, Y Yang, X Yang, S He, Z Zhu
BMC bioinformatics 16, 1-8, 2015
442015
Repeat-aware modeling and correction of short read errors
X Yang, S Aluru, K Dorman
BMC Bioinformatics 12 (Suppl 1), S52, 2011
402011
Parallel metagenomic sequence clustering via sketching and maximal quasi-clique enumeration on map-reduce clouds
X Yang, J Zola, S Aluru
2011 IEEE International Parallel & Distributed Processing Symposium, 1223-1233, 2011
372011
High-resolution HLA typing by long reads from the R10. 3 Oxford nanopore flow cells
C Liu, X Yang, BF Duffy, J Hoisington-Lopez, ML Crosby, ...
Human Immunology 82 (4), 288-295, 2021
322021
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