Hasindu Gamaarachchi
Hasindu Gamaarachchi
School of Computer Science and Engineering, UNSW Sydney
Verified email at
Cited by
Cited by
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 6272, 2020
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ...
Science advances 8 (9), eabm5386, 2022
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis
H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ...
BMC bioinformatics 21, 1-13, 2020
Autonomic trust management in cloud-based and highly dynamic IoT applications
S Namal, H Gamaarachchi, G MyoungLee, TW Um
2015 ITU Kaleidoscope: Trust in the Information Society (K-2015), 1-8, 2015
Fast nanopore sequencing data analysis with SLOW5
H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ...
Nature biotechnology 40 (7), 1026-1029, 2022
Seed-and-vote based in-memory accelerator for dna read mapping
AF Laguna, H Gamaarachchi, X Yin, M Niemier, S Parameswaran, XS Hu
Proceedings of the 39th International Conference on Computer-Aided Design, 1-9, 2020
Power analysis based side channel attack
H Gamaarachchi, H Ganegoda
arXiv preprint arXiv:1801.00932, 2018
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ...
Communications biology 3 (1), 538, 2020
Featherweight long read alignment using partitioned reference indexes
H Gamaarachchi, S Parameswaran, MA Smith
Scientific reports 9 (1), 4318, 2019
Efficient real-time selective genome sequencing on resource-constrained devices
PJ Shih, H Saadat, S Parameswaran, H Gamaarachchi
GigaScience 12, giad046, 2023
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing
A Senanayake, H Gamaarachchi, D Herath, R Ragel
BMC bioinformatics 24 (1), 31, 2023
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses
JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ...
Bioinformatics 38 (5), 1443-1446, 2022
Flexible and efficient handling of nanopore sequencing signal data with slow5tools
H Samarakoon, JM Ferguson, SP Jenner, TG Amos, S Parameswaran, ...
Genome Biology 24 (1), 69, 2023
Accelerating correlation power analysis using graphics processing units (gpus)
H Gamaarachchi, R Ragel, D Jayasinghe
7th International Conference on Information and Automation for …, 2014
Accelerating text-based plagiarism detection using GPUs
MAC Jiffriya, MACA Jahan, H Gamaarachchi, RG Ragel
2015 IEEE 10th International Conference on Industrial and Information …, 2015
Accelerated nanopore basecalling with SLOW5 data format
H Samarakoon, JM Ferguson, H Gamaarachchi, IW Deveson
Bioinformatics 39 (6), btad352, 2023
Squigulator: Simulation of nanopore sequencing signal data with tunable noise parameters
H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson
bioRxiv, 2023.05. 09.539953, 2023
Swaram: Portable energy and cost efficient embedded system for genomic processing
RP Mohanty, H Gamaarachchi, A Lambert, S Parameswaran
ACM Transactions on Embedded Computing Systems (TECS) 18 (5s), 1-24, 2019
Breaking Speck cryptosystem using correlation power analysis attack.
H Gamaarachchi, H Ganegoda, R Ragel
Journal of the National Science Foundation of Sri Lanka 45 (2), 2017
Cross layer design using HW/SW co-design and HLS to accelerate chaining in genomic analysis
K Liyanage, H Gamaarachchi, R Ragel, S Parameswaran
IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 2023
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